# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1d2zA 108 4.61e-01 1d2zA a.77.1.1 18437 1qqfA 277 7.83e-01 1c3d a.102.4.4 18875 1g2nA 264 1.41e+00 1lbd a.123.1.1 60227 1reqD 637 1.50e+00 1reqB c.1.19.1 29623 c.23.6.1 31250 1reqB 637 1.66e+00 1reqB c.1.19.1 29621 c.23.6.1 31248 1i7pA 274 1.99e+00 b.43.4.2 66048 c.25.1.1 66049 4xiaA 393 2.09e+00 4xis c.1.15.3 29439 1ndh 272 2.13e+00 1ndh b.43.4.2 25662 c.25.1.1 31552 1b8sA 504 2.51e+00 1b8sA c.3.1.2 30335 d.16.1.1 37866 1ijhA 504 2.58e+00 c.3.1.2 66161 d.16.1.1 66162 1b4vA 504 2.59e+00 1b8sA c.3.1.2 30334 d.16.1.1 37865 1d2nA 272 4.46e+00 1d2nA c.37.1.13 32428 1nsf 273 4.79e+00 1d2nA c.37.1.13 32429 1g73C 121 4.81e+00 1g3fA g.52.1.1 45375 1jj2M 186 5.01e+00 1ffkK c.55.4.1 63098 1byqA 228 5.55e+00 1yer d.122.1.1 41100 1l5jA 865 5.70e+00 1c3d 294 6.02e+00 1c3d a.102.4.4 18874 1bzg 34 6.06e+00 1bzg j.15.1.1 46166 1prxA 224 6.34e+00 1prxA c.47.1.10 33076 3cox 507 6.62e+00 1b8sA c.3.1.2 30332 d.16.1.1 37863 1aj8A 371 6.63e+00 1aj8A a.103.1.1 18900 1ffkK 186 6.75e+00 1ffkK c.55.4.1 33731 1kp9B 287 7.69e+00 c.66.1.18 68734 1yer 228 8.00e+00 1yer d.122.1.1 41101 1f89A 291 8.34e+00 d.160.1.1 64988 1g3fA 117 9.78e+00 1g3fA g.52.1.1 45378 1kwhA 492 9.87e+00 c.94.1.1 68876 1pls 113 1.00e+01 1pls b.55.1.1 26965 1ayx 492 1.05e+01 1ayx a.102.1.1 18825 1qgeE 97 1.07e+01 1cvl 1ayoA 130 1.07e+01 1ayoA b.2.4.1 22431 1b66A 140 1.13e+01 1b66A d.96.1.2 40657 1ggwA 140 1.17e+01 1ggwA a.39.1.5 60490 1irqA 71 1.18e+01 a.43.1.2 66297 1ct9A 553 1.21e+01 1ct9A c.26.2.1 31616 d.153.1.1 41834 1ncs 47 1.29e+01 1ncs g.37.1.1 45040 1jj2R 84 1.29e+01 1ffkP d.12.1.1 63103 1pytA 94 1.54e+01 1pytA d.58.3.1 39064 1g291 372 1.56e+01 1g291 1mntA 76 1.69e+01 1bazA a.43.1.1 17453 1pmc 36 2.00e+01 1pmc g.4.1.1 44382 1kpgA 287 2.02e+01 c.66.1.18 68735 1bco 327 2.04e+01 1bco b.48.1.1 26431 c.55.3.3 33676 1gtqA 140 2.07e+01 1b66A d.96.1.2 40661 1jhgA 101 2.08e+01 1jhgA a.107.1.1 19009 1ko9A 345 2.18e+01 a.96.1.3 68717 d.129.1.2 68718 1acf 125 2.19e+01 3nul d.110.1.1 40882 1ia9A 280 2.27e+01 1ia9A d.144.1.5 62113 1id1A 153 2.29e+01 1id1A c.2.1.9 62286 1ebmA 317 2.36e+01 1ebmA a.96.1.3 18751 d.129.1.2 41300 1d0cA 444 2.36e+01 d.174.1.1 64769 1jljA 189 2.41e+01 c.57.1.1 63169 1ezvD 245 2.45e+01 1be3D a.3.1.3 59546 f.2.1.8 59547 1ed5A 444 2.47e+01 1nseA d.174.1.1 42530 1d1vA 444 2.54e+01 1nseA d.174.1.1 59101 1jli 112 2.64e+01 1jli a.26.1.2 16884 1a49A 530 2.66e+01 1a49A b.58.1.1 27026 c.1.12.1 29255 c.49.1.1 33109 1ihcA 188 2.66e+01 1di6A c.57.1.1 62379 1f28A 297 2.67e+01 1bkpA d.117.1.1 59608 1trrA 107 2.73e+01 1jhgA a.107.1.1 19017 2wrpR 107 2.79e+01 1jhgA a.107.1.1 19010 1nseA 444 2.82e+01 1nseA d.174.1.1 42534 3nll 138 2.83e+01 5nul c.23.5.1 31206 5nul 138 2.86e+01 5nul c.23.5.1 31191 1lk5A 229 2.88e+01 1udiI 83 2.94e+01 1ugiA d.17.5.1 38124 1qbqA 333 3.09e+01 1ft1A a.118.6.1 19187 1sxl 97 3.13e+01 1b7fA d.58.7.1 39180 1h2aS 317 3.18e+01 2frvA e.19.1.1 43311 1pcfA 66 3.20e+01 1pcfA d.18.1.1 38142 1vqb 87 3.27e+01 1gvp b.40.4.7 25370 1jj2W 91 3.31e+01 1ffkU d.29.1.1 63108 1jcqA 382 3.34e+01 a.118.6.1 66504 1gvp 87 3.36e+01 1gvp b.40.4.7 25369 1ld8A 382 3.38e+01 1auyA 189 3.40e+01 1auyA b.10.1.2 23311 1ughI 82 3.48e+01 1ugiA d.17.5.1 38133 1ddlA 188 3.52e+01 1auyA b.10.1.2 23317 1a8l 226 3.54e+01 1a8l c.47.1.2 32777 c.47.1.2 32778 1b0nB 57 3.56e+01 1b0nB a.34.1.1 17002 1a68 95 3.57e+01 1t1dA d.42.1.2 38639 1qgtA 149 3.59e+01 1qgtA a.62.1.1 18135 1diiC 80 3.59e+01 1diiC a.3.1.1 15925 1hylA 230 3.65e+01 5ptp b.47.1.2 26076 1go3E 187 3.68e+01 b.40.4.5 65406 1e9mA 106 3.72e+01 1ayfA d.15.4.1 59397 1prxB 224 3.76e+01 1prxA c.47.1.10 33077 1ft1A 377 3.76e+01 1ft1A a.118.6.1 19186 1ckv 141 3.78e+01 1ckv d.137.1.1 41452 1iibA 106 3.79e+01 1iibA c.44.2.1 32648 1gp1A 198 3.82e+01 1gp1A c.47.1.10 33059 1cvl 319 3.87e+01 1cvl c.69.1.18 34786 2hlcA 230 3.88e+01 5ptp b.47.1.2 26074 1bhdA 118 3.92e+01 1bkrA a.40.1.1 17398 1bkdS 439 3.97e+01 1bkdS a.117.1.1 19111