PFRMAT SS
TARGET T0179
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0179.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 135
METHOD
MODEL 1
M C 0.764
S C 0.555
E C 0.362
L T 0.285
W E 0.473
Y E 0.596
T E 0.558
E E 0.512
K E 0.350
Q T 0.328
T T 0.744
K T 0.876
N T 0.871
F T 0.533
G E 0.752
I E 0.920
T E 0.961
M E 0.942
K E 0.913
V E 0.784
N E 0.698
K E 0.648
T E 0.737
L E 0.685
H E 0.603
T E 0.485
E E 0.379
Q C 0.372
T T 0.685
E T 0.784
F T 0.805
Q T 0.615
H E 0.644
L E 0.904
E E 0.965
M E 0.978
V E 0.951
E E 0.916
T E 0.604
E T 0.739
E T 0.778
F T 0.729
G T 0.496
N E 0.784
M E 0.963
L E 0.980
F E 0.975
L E 0.908
D T 0.657
G T 0.821
M E 0.606
V E 0.814
M E 0.801
T E 0.834
S E 0.528
E T 0.471
K T 0.616
D T 0.619
E T 0.394
F H 0.490
V H 0.585
Y H 0.720
H H 0.751
E H 0.796
M H 0.792
V H 0.745
A H 0.741
H H 0.513
V H 0.533
P H 0.414
L G 0.390
F H 0.352
T T 0.364
H T 0.638
P T 0.673
N T 0.710
P T 0.647
E C 0.556
H E 0.922
V E 0.984
L E 0.988
V E 0.988
V E 0.934
G E 0.451
G C 0.545
G T 0.488
D T 0.439
G H 0.595
G H 0.961
V H 0.991
I H 0.994
R H 0.993
E H 0.992
I H 0.990
L H 0.984
K H 0.897
H H 0.431
P C 0.509
S T 0.571
V T 0.621
K T 0.423
K E 0.837
A E 0.925
T E 0.953
L E 0.964
V E 0.930
D E 0.711
I C 0.650
D C 0.860
G H 0.921
K H 0.962
V H 0.981
I H 0.997
E H 0.997
Y H 0.997
S H 0.995
K H 0.992
K H 0.977
F H 0.854
L H 0.395
P T 0.349
S T 0.322
I T 0.399
A T 0.418
G T 0.472
K T 0.561
L T 0.600
D T 0.531
D T 0.601
P T 0.479
R E 0.459
V E 0.804
D E 0.909
V E 0.948
Q E 0.934
V E 0.743
D H 0.357
D H 0.473
G H 0.795
F H 0.805
M H 0.779
H H 0.808
I H 0.783
A H 0.681
K H 0.339
S T 0.482
E T 0.622
N T 0.593
Q T 0.479
Y E 0.367
D E 0.632
V E 0.979
I E 0.994
M E 0.989
V E 0.927
D C 0.402
S T 0.537
T T 0.597
E T 0.756
P T 0.761
V T 0.660
G T 0.647
P T 0.390
A T 0.336
V H 0.406
N H 0.401
L H 0.483
F H 0.502
T H 0.507
K H 0.943
G H 0.970
F H 0.981
Y H 0.997
A H 0.997
G H 0.998
I H 0.995
A H 0.965
K H 0.928
A H 0.809
L H 0.365
K T 0.713
E T 0.920
D T 0.940
G E 0.717
I E 0.971
F E 0.992
V E 0.988
A E 0.958
Q E 0.623
T T 0.432
D T 0.516
N T 0.644
P T 0.598
W T 0.486
F T 0.466
T C 0.471
P H 0.921
E H 0.950
L H 0.964
I H 0.972
T H 0.978
N H 0.978
V H 0.983
Q H 0.969
R H 0.942
D H 0.933
V H 0.902
K H 0.693
E H 0.609
I H 0.528
F T 0.490
P T 0.469
I E 0.464
T E 0.797
K E 0.865
L E 0.878
Y E 0.837
T E 0.804
A E 0.710
N E 0.754
I E 0.684
P E 0.602
T E 0.558
Y E 0.451
P T 0.683
S T 0.830
G T 0.723
L E 0.671
W E 0.930
T E 0.982
F E 0.988
T E 0.979
I E 0.956
G E 0.811
S E 0.513
K T 0.449
K T 0.516
Y T 0.505
D C 0.517
P T 0.370
L G 0.325
A H 0.349
V H 0.385
E C 0.401
D H 0.379
S H 0.334
R C 0.321
F H 0.360
F H 0.328
D C 0.327
I C 0.369
E C 0.459
T C 0.347
K C 0.356
Y C 0.374
Y C 0.527
T T 0.532
K H 0.549
D T 0.478
I H 0.504
H H 0.599
K H 0.562
A H 0.533
A H 0.543
F H 0.436
V H 0.419
L C 0.521
P H 0.559
K H 0.687
F H 0.793
V H 0.843
S H 0.815
D H 0.716
L H 0.581
I C 0.432
K C 0.864
END