PFRMAT SS
TARGET T0179
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0179.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 135
METHOD
MODEL 1
M H 0.163
S B 0.220
E H 0.284
L H 0.207
W H 0.231
Y E 0.244
T H 0.192
E E 0.240
K H 0.224
Q E 0.185
T C 0.328
K H 0.316
N S 0.441
F E 0.245
G E 0.314
I E 0.389
T A 0.397
M E 0.468
K E 0.391
V A 0.297
N H 0.495
K E 0.268
T E 0.354
L A 0.316
H B 0.241
T H 0.213
E H 0.173
Q S 0.303
T B 0.403
E H 0.367
F S 0.261
Q E 0.313
H A 0.440
L E 0.568
E E 0.717
M A 0.563
V E 0.452
E E 0.341
T E 0.383
E H 0.241
E G 0.253
F B 0.359
G S 0.306
N E 0.277
M E 0.578
L E 0.587
F E 0.496
L D 0.190
D D 0.525
G S 0.363
M B 0.347
V E 0.378
M E 0.299
T E 0.297
S B 0.208
E B 0.280
K H 0.368
D H 0.426
E H 0.718
F H 0.853
V H 0.877
Y H 0.869
H H 0.845
E H 0.821
M H 0.792
V H 0.709
A H 0.525
H H 0.312
V H 0.372
P H 0.454
L H 0.361
F H 0.238
T S 0.176
H B 0.235
P H 0.260
N S 0.274
P E 0.272
E G 0.248
H E 0.532
V E 0.688
L E 0.774
V A 0.443
V S 0.335
G D 0.192
G S 0.219
G D 0.263
D H 0.250
G H 0.345
G H 0.644
V H 0.832
I H 0.897
R H 0.899
E H 0.901
I H 0.775
L H 0.596
K H 0.342
H E 0.216
P B 0.191
S S 0.250
V E 0.311
K H 0.196
K E 0.358
A E 0.461
T E 0.397
L E 0.517
V E 0.574
D E 0.521
I B 0.405
D B 0.407
G I 0.503
K H 0.882
V H 0.900
I H 0.943
E H 0.941
Y H 0.925
S H 0.844
K H 0.762
K H 0.657
F H 0.350
L B 0.297
P H 0.358
S H 0.311
I H 0.201
A S 0.221
G B 0.158
K I 0.164
L H 0.228
D S 0.309
D E 0.324
P H 0.365
R E 0.256
V E 0.472
D E 0.603
V E 0.520
Q E 0.460
V E 0.279
D H 0.181
D E 0.211
G H 0.483
F H 0.651
M H 0.674
H H 0.582
I H 0.354
A H 0.492
K H 0.312
S E 0.184
E H 0.198
N S 0.432
Q E 0.216
Y E 0.369
D E 0.348
V E 0.672
I E 0.704
M E 0.539
V E 0.450
D A 0.285
S I 0.173
T G 0.142
E E 0.251
P I 0.180
V S 0.194
G C 0.225
P B 0.219
A H 0.262
V H 0.481
N H 0.553
L H 0.580
F H 0.449
T H 0.571
K H 0.856
G H 0.931
F H 0.930
Y H 0.943
A H 0.952
G H 0.959
I H 0.865
A H 0.809
K H 0.799
A H 0.519
L B 0.253
K C 0.613
E G 0.642
D S 0.660
G B 0.588
I E 0.728
F E 0.648
V E 0.622
A E 0.479
Q A 0.251
T B 0.187
D S 0.276
N E 0.347
P I 0.293
W H 0.275
F H 0.304
T H 0.236
P H 0.727
E H 0.889
L H 0.900
I H 0.932
T H 0.945
N H 0.955
V H 0.925
Q H 0.920
R H 0.913
D H 0.862
V H 0.738
K H 0.681
E H 0.718
I H 0.272
F E 0.241
P H 0.372
I E 0.231
T E 0.378
K E 0.458
L E 0.454
Y E 0.322
T E 0.273
A E 0.318
N E 0.312
I B 0.355
P B 0.278
T E 0.221
Y C 0.284
P H 0.123
S B 0.171
G S 0.294
L E 0.279
W E 0.380
T E 0.547
F E 0.542
T E 0.526
I E 0.365
G E 0.210
S B 0.273
K H 0.219
K E 0.228
Y B 0.233
D E 0.391
P I 0.344
L H 0.416
A H 0.391
V H 0.319
E B 0.273
D H 0.227
S H 0.280
R H 0.216
F H 0.240
F H 0.251
D H 0.180
I B 0.260
E E 0.238
T E 0.402
K E 0.364
Y E 0.376
Y B 0.276
T E 0.504
K I 0.476
D H 0.521
I H 0.424
H H 0.371
K H 0.360
A H 0.341
A H 0.345
F H 0.244
V E 0.208
L C 0.398
P H 0.439
K H 0.797
F H 0.860
V H 0.873
S H 0.887
D H 0.888
L H 0.776
I H 0.561
K H 0.577
END