PFRMAT SS
TARGET T0178
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0178.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 52
METHOD
MODEL 1
M H 0.778
I H 0.828
D H 0.834
V H 0.797
R H 0.790
K H 0.834
Y H 0.618
I H 0.434
D H 0.345
N I 0.489
A H 0.407
A S 0.556
L S 0.240
K B 0.432
P I 0.370
H S 0.660
L B 0.338
S B 0.653
E H 0.786
K H 0.936
E H 0.912
I H 0.944
E H 0.952
E H 0.973
F H 0.938
V H 0.877
L H 0.917
K H 0.877
S H 0.800
E H 0.624
E H 0.547
L B 0.530
G S 0.336
I E 0.351
Y E 0.472
A E 0.617
V E 0.701
C E 0.529
V B 0.329
N B 0.354
P I 0.413
Y H 0.574
H H 0.428
V H 0.775
K H 0.898
L H 0.913
A H 0.843
S H 0.674
S H 0.741
I I 0.304
A T 0.290
K G 0.310
K S 0.672
V E 0.582
K E 0.609
V E 0.545
C E 0.442
C E 0.448
V E 0.261
I G 0.354
G S 0.196
F B 0.244
P C 0.205
L G 0.156
G S 0.282
L S 0.179
N B 0.231
K H 0.310
T H 0.552
S H 0.671
V H 0.738
K H 0.873
V H 0.937
K H 0.972
E H 0.976
A H 0.964
V H 0.961
E H 0.976
A H 0.973
V H 0.840
R H 0.849
D B 0.446
G T 0.572
A E 0.395
Q I 0.280
E E 0.316
L E 0.549
D T 0.193
I E 0.499
V E 0.483
W E 0.432
N E 0.422
L I 0.554
S H 0.431
A H 0.462
F H 0.520
K H 0.275
S B 0.333
E S 0.393
K E 0.234
Y H 0.602
D H 0.855
F H 0.899
V H 0.919
V H 0.938
E H 0.963
E H 0.966
L H 0.954
K H 0.963
E H 0.973
I H 0.904
F H 0.766
R H 0.816
E H 0.418
T B 0.273
P F 0.289
S S 0.608
A B 0.540
V E 0.515
H E 0.530
K E 0.611
V E 0.564
I E 0.513
V E 0.481
E A 0.269
T B 0.236
P B 0.209
Y B 0.207
L B 0.315
N B 0.552
E H 0.730
E H 0.891
E H 0.912
I H 0.929
K H 0.937
K H 0.962
A H 0.935
V H 0.940
E H 0.960
I H 0.969
C H 0.944
I H 0.849
E H 0.749
A B 0.617
G T 0.582
A E 0.451
D G 0.249
F A 0.462
I E 0.584
K E 0.333
T B 0.306
S G 0.126
T B 0.283
G D 0.287
F B 0.233
A C 0.390
P B 0.190
R G 0.228
G S 0.562
T B 0.405
T B 0.657
L H 0.697
E H 0.919
E H 0.932
V H 0.947
R H 0.965
L H 0.965
I H 0.948
K H 0.871
S H 0.858
S H 0.671
A H 0.318
K H 0.357
G H 0.343
R G 0.355
I B 0.463
K E 0.285
V E 0.532
K E 0.385
A E 0.268
S G 0.203
G S 0.348
G S 0.160
I E 0.229
R H 0.321
D B 0.533
L H 0.800
E H 0.938
T H 0.898
A H 0.915
I H 0.923
S H 0.945
M H 0.906
I H 0.851
E H 0.859
A H 0.773
G H 0.595
A H 0.633
D H 0.560
R H 0.355
I H 0.265
G H 0.233
T H 0.298
S H 0.493
S H 0.614
G H 0.776
I H 0.866
S H 0.908
I H 0.888
A H 0.705
E H 0.649
E H 0.413
F H 0.333
L H 0.256
K E 0.174
R H 0.225
H E 0.187
L E 0.217
I E 0.248
END