PFRMAT SS
TARGET T0177
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0177.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 63
METHOD
MODEL 1
M D 0.157
G H 0.194
R H 0.335
A H 0.648
F H 0.830
E H 0.902
Y H 0.869
R H 0.898
R H 0.899
A H 0.874
A H 0.875
K H 0.741
E H 0.727
K H 0.742
R H 0.781
W H 0.782
D H 0.836
K H 0.889
M H 0.818
S H 0.895
K H 0.929
V H 0.931
F H 0.924
P H 0.949
K H 0.945
L H 0.930
A H 0.936
K H 0.972
A H 0.981
I H 0.969
T H 0.970
L H 0.979
A H 0.980
A H 0.878
K H 0.817
D B 0.510
G S 0.364
G C 0.297
S B 0.407
E E 0.380
P I 0.532
D H 0.563
T S 0.364
N E 0.341
A H 0.701
K H 0.869
L H 0.871
R H 0.936
T H 0.961
A H 0.946
I H 0.931
L H 0.950
N H 0.931
A H 0.886
K H 0.718
A H 0.763
Q B 0.464
N S 0.503
M B 0.394
P B 0.657
K H 0.543
D H 0.882
N H 0.902
I H 0.956
D H 0.967
A H 0.973
A H 0.943
I H 0.831
K H 0.817
R H 0.453
A S 0.235
S H 0.270
S D 0.253
K D 0.177
E S 0.334
G E 0.248
N E 0.293
L A 0.401
S B 0.346
E A 0.619
I E 0.506
T E 0.463
Y E 0.440
E E 0.315
G E 0.398
K E 0.152
A C 0.442
N H 0.313
F S 0.251
G S 0.216
V E 0.516
L E 0.512
I E 0.561
I E 0.467
M A 0.321
E H 0.244
C H 0.311
M H 0.326
T H 0.293
D S 0.274
N E 0.338
P H 0.471
T H 0.388
R H 0.654
T H 0.677
I H 0.878
A H 0.939
N H 0.959
L H 0.947
K H 0.945
S H 0.968
Y H 0.953
F H 0.913
N H 0.776
K H 0.640
T B 0.503
Q S 0.373
G B 0.242
A E 0.297
S E 0.364
I E 0.294
V C 0.241
P C 0.241
N G 0.265
G S 0.502
S E 0.283
L E 0.319
E E 0.330
F E 0.261
M E 0.286
F E 0.253
N E 0.168
R E 0.244
K E 0.230
S D 0.278
V E 0.619
F E 0.738
E E 0.485
C E 0.421
L B 0.327
K B 0.211
N B 0.240
E H 0.437
V H 0.461
E H 0.370
N S 0.296
L H 0.209
K S 0.186
L B 0.447
S B 0.507
L H 0.778
E H 0.926
D H 0.927
L H 0.933
E H 0.906
F H 0.923
A H 0.880
L H 0.885
I H 0.759
D H 0.666
Y B 0.590
G T 0.467
L E 0.456
E H 0.391
E S 0.255
L A 0.227
E E 0.281
E A 0.205
V H 0.161
E D 0.180
D S 0.299
K E 0.431
I E 0.716
I E 0.711
I E 0.643
R A 0.435
G B 0.439
D B 0.521
Y I 0.567
N H 0.560
S S 0.339
F H 0.639
K H 0.867
L H 0.917
L H 0.899
N H 0.921
E H 0.948
G H 0.950
F H 0.948
E H 0.818
S H 0.876
L B 0.662
K T 0.482
L B 0.484
P E 0.463
I A 0.591
L F 0.313
K A 0.466
A E 0.407
S E 0.502
L A 0.472
Q E 0.422
R E 0.344
I B 0.366
A B 0.305
T G 0.160
T B 0.355
P E 0.377
I B 0.404
E E 0.385
L B 0.428
N B 0.473
D H 0.590
E H 0.847
Q H 0.742
M H 0.922
E H 0.916
L H 0.900
T H 0.901
E H 0.943
K H 0.957
L H 0.939
L H 0.873
D H 0.883
R H 0.749
I H 0.492
E H 0.567
D S 0.662
D E 0.393
D H 0.548
D S 0.366
V H 0.326
V H 0.463
A H 0.248
L E 0.262
Y E 0.246
T B 0.169
N S 0.206
I H 0.291
E H 0.226
END