# List of top-scoring protein chains for t2k-100-30-dssp_ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1lfpA 249 1.87e-48 1konA 249 3.23e-45 2ng1 293 1.67e-01 1ng1 a.24.13.1 16962 c.37.1.10 32273 1a8q 274 2.42e-01 1brt c.69.1.12 34702 1ng1 294 5.52e-01 1ng1 a.24.13.1 16961 c.37.1.10 32272 1ad3A 452 5.92e-01 1ad3A c.82.1.1 35335 1b4aA 149 6.55e-01 1b4aA a.4.5.3 16088 d.74.2.1 39721 1jpnA 296 7.26e-01 a.24.13.1 67039 c.37.1.10 67040 1bmtA 246 7.91e-01 1bmtA a.46.1.1 17757 c.23.6.1 31235 1jcjA 260 1.37e+00 c.1.10.1 66499 1qaxA 428 1.49e+00 1qaxA d.58.20.1 39376 d.179.1.1 42597 1phnB 172 1.78e+00 1qgwC a.1.1.3 15642 1jclA 260 1.90e+00 c.1.10.1 66501 1gnlA 544 2.46e+00 1gewA 356 2.50e+00 1gewA c.67.1.1 60470 1eu8A 409 2.84e+00 1eu8A c.94.1.1 59502 4uagA 437 3.53e+00 4uagA c.5.1.1 30651 c.59.1.1 33952 c.72.2.1 34955 1uag 437 3.54e+00 4uagA c.5.1.1 30653 c.59.1.1 33954 c.72.2.1 34957 3uagA 437 3.81e+00 4uagA c.5.1.1 30652 c.59.1.1 33953 c.72.2.1 34956 1fg7A 356 4.20e+00 1gewA c.67.1.1 59819 1l1lA 739 4.25e+00 1l9xA 315 4.35e+00 1jdiA 231 4.53e+00 c.74.1.1 66551 1pea 385 4.66e+00 1pea c.93.1.1 35662 1qc9A 276 4.84e+00 1ckqA c.52.1.1 33235 1brt 277 4.94e+00 1brt c.69.1.12 34699 1j8mF 297 4.95e+00 1ng1 a.24.13.1 62742 c.37.1.10 62743 1ktpB 172 4.97e+00 1bp7A 152 5.21e+00 1bp7A d.95.2.1 40568 1g9zA 152 5.61e+00 1bp7A d.95.2.1 60408 1broA 277 5.71e+00 1brt c.69.1.12 34700 1e2uA 553 6.48e+00 1e1dA e.26.1.1 43362 1gntA 553 6.48e+00 1dpgA 485 6.57e+00 1dpgA c.2.1.3 30074 d.81.1.5 39989 1erzA 303 6.92e+00 1erzA d.160.1.2 59498 1jxhA 288 7.01e+00 c.72.1.2 67415 1geqA 248 7.09e+00 2tysA c.1.2.4 28589 1afi 72 7.54e+00 1aw0 d.58.17.1 39339 1e1dA 553 8.14e+00 1e1dA e.26.1.1 43363 1i9yA 347 8.24e+00 1i9yA d.151.1.2 62101 1eriA 276 8.34e+00 1ckqA c.52.1.1 33231 1i9zA 347 8.46e+00 1i9yA d.151.1.2 62102 1k4jA 230 8.76e+00 1ckqA 276 8.89e+00 1ckqA c.52.1.1 33229 1iciA 256 9.14e+00 1iciA c.31.1.5 62266 1xxcA 78 9.37e+00 1xxaA d.74.2.1 39712 1g8jA 825 9.53e+00 1g8jA b.52.2.2 26924 c.81.1.1 35332 1l7mA 211 9.58e+00 1hnnA 282 1.01e+01 c.66.1.15 65895 1cl8A 276 1.01e+01 1ckqA c.52.1.1 33230 1g8kA 825 1.03e+01 1g8jA b.52.2.2 26920 c.81.1.1 35328 1eywA 331 1.05e+01 1pscA c.1.9.3 29057 1fxd 58 1.07e+01 1fxd d.58.1.1 38941 2dpg 485 1.08e+01 1dpgA c.2.1.3 30076 d.81.1.5 39991 1i0dA 332 1.09e+01 1pscA c.1.9.3 61487 1eqcA 394 1.09e+01 1cz1A c.1.8.3 28811 1hzyA 332 1.09e+01 1pscA c.1.9.3 61468 1e0tA 470 1.10e+01 1a49A b.58.1.1 27064 c.1.12.1 29292 c.49.1.1 33146 2hqi 72 1.10e+01 1aw0 d.58.17.1 39340 1f1eA 154 1.12e+01 a.22.1.2 64927 1f5sA 211 1.13e+01 1f5sA c.108.1.4 59656 1j97A 211 1.13e+01 1f5sA c.108.1.4 62753 1cz1A 394 1.14e+01 1cz1A c.1.8.3 28839 1pscA 365 1.18e+01 1pscA c.1.9.3 29058 1edoA 244 1.24e+01 1ybvA c.2.1.2 29896 1eumA 165 1.25e+01 1eumA a.25.1.1 59507 4pfk 319 1.27e+01 3pfk c.89.1.1 35582 6pfkA 319 1.27e+01 3pfk c.89.1.1 35583 1hf2A 210 1.29e+01 1hf2A b.80.3.1 60992 c.102.1.1 60993 1dkuA 317 1.37e+01 1dkuA c.61.1.2 34118 c.61.1.2 34119 1f3vA 179 1.39e+01 1f3vA d.58.22.1 39382 1g7rA 594 1.40e+01 1g7rA b.43.3.1 25716 b.43.3.1 25717 c.20.1.1 31034 c.37.1.8 32149 1hw6A 278 1.44e+01 1frb c.1.7.1 61296 1jg8A 347 1.48e+01 1jg8A c.67.1.1 62946 1dywA 173 1.48e+01 2cpl b.62.1.1 27505 1qpsA 261 1.52e+01 1ckqA c.52.1.1 33234 1a58 177 1.52e+01 2cpl b.62.1.1 27495 1pta 318 1.64e+01 1pscA c.1.9.3 29064 1a2zA 220 1.65e+01 1a2zA c.56.4.1 33794 1e3oC 160 1.67e+01 1au7A a.4.1.1 59197 a.35.1.1 59198 1efuB 282 1.71e+01 1efuB a.5.2.2 58975 d.43.1.1 58976 d.43.1.1 38677 1l1eA 287 1.72e+01 1pytA 94 1.73e+01 1pytA d.58.3.1 39064 1ihgA 370 1.77e+01 2cpl a.118.8.1 62380 b.62.1.1 62381 1qd9A 124 1.78e+01 1qu9A d.79.1.1 39758 1gx1A 160 1.82e+01 1vhh 162 1.88e+01 1vhh d.65.1.2 39550 3pfk 319 1.90e+01 3pfk c.89.1.1 35581 1mroC 247 1.93e+01 1mroC d.58.31.1 39437 1hbnC 248 1.96e+01 1mroC d.58.31.1 60902 1b8aA 438 2.00e+01 1b8aA b.40.4.1 25244 d.104.1.1 40765 1t7pA 698 2.00e+01 1t7pA c.55.3.5 33712 e.8.1.1 43005 1fjgT 106 2.09e+01 1fjfT a.7.6.1 16338 1dqeA 137 2.20e+01 1dqeA a.39.2.1 17388 1ihrA 76 2.21e+01 1ihrA d.191.1.1 62392 1jy8A 159 2.21e+01 d.79.5.1 67452 1aw0 72 2.21e+01 1aw0 d.58.17.1 39342 2acr 315 2.25e+01 1frb c.1.7.1 28674 1b0pA 1231 2.29e+01 c.36.1.4 31831 c.36.1.4 31832 c.48.1.3 33104 c.64.1.1 34157 d.58.1.5 39003 1kmnD 424 2.30e+01 1adjA c.51.1.1 33185 d.104.1.1 40734 1ads 315 2.32e+01 1frb c.1.7.1 28671 1xxaA 78 2.38e+01 1xxaA d.74.2.1 39700 1cp2A 269 2.47e+01 1cp2A c.37.1.10 32269 1qm4A 396 2.63e+01 1mxb d.130.1.1 41350 d.130.1.1 41351 d.130.1.1 41352 1cfr 285 2.67e+01 1cfr c.52.1.7 33312 1km4A 247 2.67e+01 1a49A 530 2.68e+01 1a49A b.58.1.1 27026 c.1.12.1 29255 c.49.1.1 33109 1lpuA 332 2.69e+01 1i12A 160 2.72e+01 1i21A d.108.1.1 61515 2gbp 309 2.78e+01 1gca c.93.1.1 35657 2gdm 153 2.82e+01 2gdm a.1.1.2 15212 1lh1 153 2.84e+01 2gdm a.1.1.2 15222 2lh2 153 2.84e+01 2gdm a.1.1.2 15220 1hfc 169 2.87e+01 1hfc d.92.1.11 40335 1j5eK 129 2.90e+01 1ash 150 2.95e+01 1ash a.1.1.2 15622 1hy7A 173 2.96e+01 d.92.1.11 65957 1kekA 1231 2.99e+01 c.36.1.4 68524 c.36.1.4 68525 c.48.1.3 68526 c.64.1.1 68527 d.58.1.5 68528 1af5 126 3.01e+01 1bp7A d.95.2.1 40572 1i1dA 161 3.01e+01 1i21A d.108.1.1 61526 1a80 277 3.05e+01 1frb c.1.7.1 28700 1kskA 234 3.07e+01 1rpjA 288 3.13e+01 2dri c.93.1.1 35656 1g3qA 237 3.13e+01 1hyqA c.37.1.10 60237 2lbp 346 3.16e+01 2liv c.93.1.1 35709 1dvjA 246 3.16e+01 1dvjA c.1.2.3 28546 1pmaA 233 3.20e+01 1pmaA d.153.1.4 41918 1jkmB 361 3.24e+01 1jkmA c.69.1.2 34634 1d1rA 116 3.27e+01 1d1rA d.64.1.1 39548 1gdeA 389 3.28e+01 c.67.1.1 60456 1ckiA 317 3.29e+01 1csn d.144.1.1 41660 1aogA 485 3.29e+01 3grs c.3.1.5 30517 c.3.1.5 30518 d.87.1.1 40190 1b4eA 323 3.30e+01 1b4kA c.1.10.3 29186 1i21A 159 3.33e+01 1i21A d.108.1.1 61549 1dkrA 317 3.34e+01 1dkuA c.61.1.2 34114 c.61.1.2 34115 1a6q 382 3.44e+01 1a6q d.158.1.1 42063 1fgkA 310 3.47e+01 1fgkA d.144.1.2 41693 1jceA 344 3.47e+01 c.55.1.1 62876 c.55.1.1 62877 1jcfA 344 3.48e+01 c.55.1.1 62878 c.55.1.1 62879 1eb0A 147 3.50e+01 b.107.1.1 64890 d.58.38.1 64891 1a88A 275 3.51e+01 1brt c.69.1.12 34707 1cqqA 180 3.57e+01 1cqqA b.47.1.4 26422 1b33N 67 3.59e+01 1b33N d.30.1.1 38459 1jkmA 358 3.61e+01 1jkmA c.69.1.2 34633 2pec 353 3.63e+01 1air b.80.1.1 28019 1vokA 200 3.67e+01 1ytbA d.129.1.1 41242 d.129.1.1 41243 1earA 147 3.68e+01 b.107.1.1 64875 d.58.38.1 64876 1ja9A 274 3.70e+01 c.2.1.2 62817 1uae 419 3.75e+01 1uae d.68.2.2 39574 1dvjC 246 3.79e+01 1dvjA c.1.2.3 28548 1rpa 342 3.81e+01 1cviA c.60.1.2 33983 1jltB 122 3.82e+01 a.133.1.2 66868 1abrA 251 3.90e+01 1mrj d.165.1.1 42196 1t1dA 100 3.95e+01 1t1dA d.42.1.2 38637 1xxbA 78 3.98e+01 1xxaA d.74.2.1 39706