PFRMAT SS
TARGET T0176
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0176.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 31
METHOD
MODEL 1
M S 0.168
D H 0.220
G H 0.232
V H 0.231
M H 0.405
S H 0.432
A H 0.538
V H 0.374
T H 0.373
V E 0.189
N C 0.190
D H 0.269
D B 0.223
G S 0.292
L E 0.645
V E 0.624
L E 0.678
R E 0.554
L E 0.691
Y E 0.446
I B 0.355
Q C 0.593
P H 0.384
K S 0.622
A B 0.276
S H 0.258
R H 0.227
D B 0.168
S E 0.178
I A 0.305
V B 0.182
G E 0.184
L A 0.156
H D 0.185
G D 0.197
D S 0.290
E E 0.400
V E 0.604
K E 0.569
V E 0.621
A E 0.542
I E 0.442
T E 0.222
A C 0.602
P B 0.489
P B 0.412
V H 0.348
D H 0.383
G S 0.331
Q H 0.603
A H 0.697
N H 0.868
S H 0.904
H H 0.941
L H 0.950
V H 0.944
K H 0.961
F H 0.970
L H 0.907
G H 0.896
K H 0.785
Q H 0.472
F B 0.787
R S 0.440
V B 0.510
A B 0.519
K I 0.521
S H 0.445
Q S 0.395
V E 0.659
V E 0.720
I E 0.401
E A 0.267
K D 0.358
G D 0.302
E H 0.198
L E 0.170
G E 0.308
R E 0.217
H E 0.275
K E 0.411
Q E 0.554
I E 0.641
K E 0.603
I E 0.362
I H 0.286
N B 0.241
P B 0.245
Q B 0.222
Q H 0.252
I B 0.419
P H 0.680
P H 0.879
E H 0.913
V H 0.900
A H 0.804
A H 0.811
L H 0.640
I B 0.197
N S 0.192
END