# List of top-scoring protein chains for t2k-100-30-dssp_ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jrmA 104 8.22e-13 d.206.1.1 67136 1qj2B 809 1.01e+00 1qj2B d.41.1.1 38589 d.133.1.1 41419 1p35A 299 1.03e+00 1p35A b.28.1.1 23925 1qh5A 260 1.14e+00 1qh5A d.157.1.2 42057 1qh3A 260 1.14e+00 1qh5A d.157.1.2 42059 7at1B 154 1.20e+00 8atcB d.58.2.1 39053 g.41.7.1 45305 1tn3 137 2.32e+00 1htn d.169.1.1 42423 1htn 182 2.67e+00 1htn d.169.1.1 42424 h.1.1.1 45426 8atcB 154 3.21e+00 8atcB d.58.2.1 39027 g.41.7.1 45279 1d09B 153 5.49e+00 8atcB d.58.2.1 39015 g.41.7.1 45267 6cts 433 5.59e+00 1csh a.103.1.1 18891 1jj2R 84 5.92e+00 1ffkP d.12.1.1 63103 1reqB 637 8.41e+00 1reqB c.1.19.1 29621 c.23.6.1 31248 1nfa 178 8.44e+00 1a02N b.2.5.1 22442 1eulA 994 9.20e+00 1eulA f.2.1.10 43726 1dptA 117 9.45e+00 1dptA d.80.1.3 39862 1gg4A 452 9.62e+00 1gg4A c.98.1.1 58985 c.59.1.1 33957 c.72.2.1 58986 2pgd 482 1.31e+01 2pgd a.100.1.1 18778 c.2.1.6 30190 1d3vA 323 1.34e+01 1d3vA c.42.1.1 32559 1a8q 274 1.45e+01 1brt c.69.1.12 34702 1trb 320 1.47e+01 1trb c.3.1.5 30529 c.3.1.5 30530 1hg5A 289 1.48e+01 1hg5A a.118.10.1 19221 1hf8A 289 1.48e+01 1hg5A a.118.10.1 19219 1rlaA 323 1.55e+01 1d3vA c.42.1.1 32561 1jscA 630 1.59e+01 c.31.1.3 67224 c.36.1.1 67225 c.36.1.1 67226 1aerA 205 1.67e+01 1aerA d.166.1.1 42249 1dmaA 214 1.68e+01 1aerA d.166.1.1 42251 1ff9A 450 1.73e+01 1ff9A c.2.1.3 30039 d.81.1.2 39954 1j6zA 376 1.74e+01 1yagA c.55.1.1 62667 c.55.1.1 62668 1e25A 282 1.82e+01 1e25A e.3.1.1 42731 1byrA 155 2.02e+01 1byrA d.136.1.1 41450 1hlgA 371 2.04e+01 1hlgA c.69.1.6 34656 1d3yA 301 2.09e+01 1d3yA e.12.1.1 43252 1ef8A 261 2.44e+01 1ef8A c.14.1.3 30921 1csh 435 2.44e+01 1csh a.103.1.1 18880 1wba 175 2.47e+01 1wba b.42.4.1 25591 2hqi 72 2.58e+01 1aw0 d.58.17.1 39340 1seiA 130 2.63e+01 1seiA d.140.1.1 41463 1ffkP 84 2.68e+01 1ffkP d.12.1.1 37493 1qmhA 347 2.76e+01 1qmhA c.47.2.1 33082 d.68.2.1 39568 1a59 378 2.88e+01 1aj8A a.103.1.1 18902 1c3pA 375 3.02e+01 1c3pA c.42.1.2 32606 2btfA 375 3.10e+01 1yagA c.55.1.1 33429 c.55.1.1 33430 1fc6A 388 3.17e+01 1fc6A b.36.1.3 64738 c.14.1.2 64739 1l7mA 211 3.22e+01 1f5sA 211 3.24e+01 1f5sA c.108.1.4 59656 1j97A 211 3.24e+01 1f5sA c.108.1.4 62753 1reqD 637 3.25e+01 1reqB c.1.19.1 29623 c.23.6.1 31250 1jj2W 91 3.32e+01 1ffkU d.29.1.1 63108 1hfoA 113 3.38e+01 d.80.1.3 61006 1a6q 382 3.46e+01 1a6q d.158.1.1 42063 1eudA 311 3.51e+01 2scuA c.2.1.8 30312 c.23.4.1 31140 1k5hA 398 3.51e+01 a.69.3.1 68192 c.2.1.3 68193 d.81.1.3 68194 1aci 76 3.52e+01 1qa6A a.4.7.1 16246 1kblA 873 3.57e+01 c.1.12.2 68384 c.8.1.1 68385 d.142.1.5 68386 1eyyA 510 3.72e+01 1eyyA c.82.1.1 35389 1f15B 218 3.73e+01 1f15B b.10.1.2 23321 1tie 172 3.85e+01 1wba b.42.4.1 25592 2bc2A 227 3.90e+01 1a7tA d.157.1.1 42031 1ffkU 91 3.90e+01 1ffkU d.29.1.1 38458 1mmsA 140 3.93e+01 1mmsA a.4.7.1 16247 d.47.1.1 38766