PFRMAT SS
TARGET T0175
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0175.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 561
METHOD
MODEL 1
M E 0.173
D H 0.156
I E 0.163
P H 0.231
R H 0.236
I H 0.223
F H 0.316
T H 0.280
I H 0.237
S H 0.337
E H 0.272
S H 0.203
E H 0.303
H S 0.284
R B 0.169
I H 0.212
H H 0.235
N H 0.349
P H 0.658
F H 0.631
T H 0.712
E H 0.844
E H 0.890
K H 0.899
Y H 0.906
A H 0.927
T H 0.941
L H 0.897
G H 0.827
R H 0.793
V H 0.521
L B 0.550
R S 0.355
M B 0.381
K C 0.458
P G 0.516
G S 0.694
T B 0.460
R E 0.572
I E 0.449
L E 0.532
D A 0.414
L S 0.274
G D 0.283
S B 0.171
G S 0.186
S H 0.348
G H 0.465
E H 0.806
M H 0.903
L H 0.908
C H 0.930
T H 0.954
W H 0.912
A H 0.838
R H 0.779
D H 0.528
H B 0.563
G S 0.360
I B 0.416
T E 0.470
G A 0.514
T E 0.316
G E 0.491
I E 0.391
D E 0.493
M B 0.381
S B 0.499
S H 0.536
L H 0.900
F H 0.906
T H 0.956
A H 0.956
Q H 0.963
A H 0.925
K H 0.932
R H 0.944
R H 0.920
A H 0.895
E H 0.771
E H 0.803
L B 0.750
G T 0.433
V S 0.169
S B 0.242
E G 0.235
R S 0.260
V E 0.590
H E 0.696
F E 0.517
I E 0.514
H E 0.292
N B 0.230
D E 0.244
A I 0.502
A H 0.416
G S 0.425
Y B 0.293
V H 0.165
A B 0.240
N H 0.213
E I 0.156
K S 0.424
C E 0.339
D G 0.421
V E 0.644
A E 0.602
A E 0.592
C A 0.340
V H 0.149
G B 0.165
A H 0.273
T H 0.257
W H 0.327
I S 0.478
A E 0.305
G H 0.255
G E 0.282
F H 0.476
A H 0.849
G H 0.889
A H 0.911
E H 0.925
E H 0.934
L H 0.945
L H 0.842
A H 0.775
Q H 0.782
S S 0.390
L B 0.406
K C 0.697
P G 0.719
G S 0.733
G B 0.600
I E 0.715
M E 0.669
L E 0.657
I E 0.477
G E 0.284
E E 0.331
P E 0.214
Y B 0.231
W B 0.163
R H 0.197
Q S 0.176
L B 0.157
P B 0.200
A H 0.218
T H 0.264
E H 0.287
E H 0.293
I H 0.380
A H 0.376
Q H 0.363
A H 0.346
C H 0.299
G H 0.180
V E 0.163
S B 0.228
S H 0.167
T S 0.149
S I 0.217
D S 0.218
F B 0.270
L B 0.377
T B 0.523
L H 0.704
P H 0.906
G H 0.930
L H 0.939
V H 0.946
G H 0.962
A H 0.960
F H 0.936
D H 0.830
D H 0.859
L B 0.545
G S 0.448
Y E 0.353
D B 0.442
V A 0.598
V E 0.351
E E 0.557
M A 0.369
V B 0.345
L E 0.272
A B 0.217
D B 0.301
Q H 0.231
E H 0.264
G H 0.183
W H 0.265
D H 0.428
R H 0.313
Y H 0.344
E H 0.402
A H 0.579
A H 0.648
K H 0.702
W H 0.803
L H 0.850
T H 0.868
M H 0.895
R H 0.927
R H 0.934
W H 0.905
L H 0.855
E H 0.841
A H 0.528
N H 0.501
P H 0.637
D H 0.627
D H 0.599
D H 0.761
F H 0.842
A H 0.874
A H 0.898
E H 0.865
V H 0.858
R H 0.836
A H 0.836
E H 0.748
L H 0.600
N H 0.668
I H 0.429
A H 0.297
P H 0.531
K H 0.688
R H 0.755
Y H 0.735
V H 0.854
T H 0.877
Y H 0.904
A H 0.913
R H 0.920
E H 0.938
C H 0.905
F H 0.906
G H 0.914
W H 0.907
G H 0.905
V H 0.898
F H 0.893
A H 0.847
L H 0.791
I H 0.714
A H 0.575
R H 0.335
END