PFRMAT SS
TARGET T0174
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0174.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 1
METHOD
MODEL 1
M C 0.795
Q C 0.628
V C 0.512
E C 0.387
A C 0.346
N T 0.386
S T 0.443
E T 0.339
R E 0.278
R E 0.430
V E 0.559
K E 0.694
I E 0.721
L E 0.676
G E 0.609
I E 0.383
D C 0.357
R T 0.509
S T 0.694
E T 0.710
N T 0.630
S T 0.481
P C 0.447
V E 0.570
L E 0.720
T E 0.766
Y E 0.785
M E 0.719
E E 0.645
T E 0.372
E T 0.391
D T 0.469
D T 0.620
P T 0.581
N T 0.520
F T 0.451
R T 0.330
N T 0.331
S T 0.286
K H 0.279
L H 0.268
A H 0.261
A C 0.306
A C 0.326
P T 0.361
H T 0.339
T E 0.534
V E 0.695
H E 0.688
M E 0.682
M E 0.448
D T 0.358
S T 0.457
G T 0.448
F E 0.427
L E 0.610
A E 0.656
I E 0.607
N E 0.379
R H 0.283
Q E 0.329
C E 0.410
L E 0.453
V E 0.430
K T 0.297
G T 0.415
K T 0.325
A E 0.469
I E 0.602
L E 0.653
A E 0.542
R E 0.362
E C 0.482
P C 0.483
K C 0.409
S T 0.480
S T 0.456
N T 0.437
E T 0.377
H T 0.281
M H 0.296
I H 0.304
D H 0.326
D H 0.314
L C 0.332
P C 0.362
K T 0.355
H T 0.364
A T 0.360
H H 0.349
D H 0.456
Q H 0.666
H H 0.642
T H 0.784
L H 0.862
S H 0.871
I H 0.895
L H 0.895
R H 0.883
D H 0.859
F H 0.850
I H 0.783
D H 0.738
Q H 0.675
L H 0.588
K H 0.373
L H 0.326
H T 0.296
N C 0.293
V E 0.510
Y E 0.646
E E 0.770
I E 0.730
N E 0.608
F E 0.556
Y E 0.442
D E 0.328
P T 0.448
L T 0.495
D T 0.662
S T 0.585
S T 0.576
G T 0.533
K C 0.337
L E 0.362
A E 0.447
V E 0.439
I H 0.558
P H 0.727
M H 0.763
L H 0.770
I H 0.840
A H 0.850
L H 0.859
W H 0.898
K H 0.893
C H 0.880
M H 0.826
L H 0.684
A H 0.610
S H 0.354
E T 0.381
T T 0.397
D T 0.432
I T 0.348
C T 0.304
D H 0.367
Q H 0.762
E H 0.814
V H 0.880
L H 0.901
K H 0.909
S H 0.900
I H 0.885
M H 0.892
N H 0.857
S H 0.806
V H 0.808
I H 0.763
A H 0.737
K H 0.656
F H 0.540
E H 0.443
L H 0.375
Q C 0.296
I C 0.331
P C 0.432
C C 0.333
K T 0.365
N T 0.333
A E 0.321
V E 0.480
I E 0.493
D E 0.419
A E 0.342
T E 0.354
L T 0.348
S T 0.507
G T 0.546
S T 0.465
R T 0.408
E E 0.304
E E 0.544
V E 0.721
H E 0.824
I E 0.892
I E 0.877
A E 0.738
E T 0.402
D T 0.602
G T 0.540
S C 0.344
L E 0.412
E E 0.348
N T 0.489
S T 0.608
N T 0.613
G T 0.543
T C 0.415
T E 0.362
E E 0.335
H E 0.349
F E 0.333
N E 0.325
K T 0.356
K T 0.363
H T 0.425
D E 0.315
L E 0.690
V E 0.855
F E 0.878
V E 0.780
K E 0.549
T T 0.336
D T 0.363
L C 0.438
H C 0.528
P T 0.379
E G 0.395
D G 0.370
F C 0.387
T C 0.414
P T 0.370
Q T 0.383
M T 0.365
F C 0.397
P H 0.350
S H 0.525
Q H 0.687
A H 0.725
K H 0.783
A H 0.830
K H 0.780
L H 0.783
L H 0.804
R H 0.783
D H 0.742
A H 0.704
F H 0.579
N H 0.381
N C 0.351
E T 0.330
E H 0.325
D T 0.362
E H 0.347
D H 0.360
T T 0.337
F H 0.335
P H 0.364
D H 0.432
I H 0.536
L H 0.480
V H 0.523
P H 0.660
A H 0.662
Y H 0.640
M H 0.557
T H 0.496
A H 0.505
H H 0.352
S T 0.326
K T 0.340
N T 0.349
R T 0.277
V C 0.274
R E 0.269
Q T 0.298
E T 0.402
D T 0.435
Y E 0.354
T E 0.593
C E 0.699
L E 0.679
E E 0.647
V E 0.606
E E 0.518
F E 0.299
D T 0.331
S H 0.418
Q H 0.677
V H 0.760
A H 0.799
L H 0.843
E H 0.817
K H 0.812
L H 0.781
M H 0.734
N H 0.542
E H 0.542
H H 0.404
E H 0.341
Q C 0.278
V T 0.332
E T 0.377
G T 0.342
F E 0.462
E E 0.669
V E 0.712
Q E 0.622
Q T 0.397
G T 0.539
G E 0.524
I E 0.873
L E 0.937
V E 0.936
A E 0.894
L E 0.737
K E 0.520
K T 0.383
D T 0.506
S T 0.510
F T 0.423
F C 0.358
D C 0.356
D H 0.663
E H 0.742
L H 0.821
I H 0.841
E H 0.886
K H 0.887
I H 0.874
A H 0.848
I H 0.816
A H 0.741
I H 0.637
A H 0.483
T H 0.436
E H 0.342
S T 0.289
R T 0.308
Q H 0.266
S C 0.285
V E 0.298
S E 0.286
S E 0.413
V E 0.464
S E 0.550
F E 0.485
D E 0.460
L E 0.434
L E 0.428
K E 0.439
L C 0.397
G T 0.667
P T 0.767
G T 0.761
A T 0.596
S E 0.374
L E 0.620
V E 0.665
T E 0.616
L E 0.500
A E 0.290
N T 0.373
S T 0.388
R T 0.336
R C 0.335
F C 0.443
E C 0.397
P T 0.430
E T 0.366
C E 0.516
R E 0.711
V E 0.907
V E 0.949
L E 0.944
Q E 0.935
I E 0.905
E E 0.892
V E 0.827
K E 0.625
P E 0.478
V C 0.577
S T 0.511
P T 0.655
G T 0.756
E T 0.599
T C 0.442
S C 0.458
S T 0.414
E T 0.374
G T 0.381
I T 0.356
S C 0.372
D T 0.380
E T 0.364
H T 0.339
H T 0.305
Y H 0.312
E H 0.302
E H 0.273
Y C 0.342
D C 0.375
E H 0.503
D H 0.477
D H 0.511
I H 0.635
M H 0.660
E H 0.616
E H 0.583
E H 0.488
E H 0.464
A C 0.368
P H 0.325
S H 0.346
A H 0.306
R C 0.308
Q T 0.319
D C 0.335
D T 0.337
T C 0.362
Y C 0.314
D T 0.405
E T 0.393
D C 0.466
E C 0.651
E C 0.950
END