# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jksA 294 4.55e-02 1k47A 337 4.37e-01 1kkhA 317 5.00e-01 1qo7A 394 9.33e-01 1qo7A c.69.1.11 34697 1e5dA 402 1.44e+00 1e5dA c.23.5.1 31208 d.157.1.3 42061 1e4cP 215 1.67e+00 2fua c.74.1.1 34969 1fcqA 350 2.87e+00 c.1.8.9 65006 1fua 215 3.26e+00 2fua c.74.1.1 34973 3mhtA 327 3.28e+00 6mhtA c.66.1.10 34234 2fua 215 3.38e+00 2fua c.74.1.1 34977 1g38A 393 3.47e+00 2admA c.66.1.10 60235 2admA 421 3.49e+00 2admA c.66.1.10 34238 6mhtA 327 3.53e+00 6mhtA c.66.1.10 34226 1hmy 327 4.04e+00 6mhtA c.66.1.10 34229 1soxA 466 5.02e+00 1soxA b.1.1.5 21947 d.120.1.1 41090 d.176.1.1 42563 1eqjA 511 5.49e+00 1ejjA c.105.1.1 59495 c.76.1.3 59496 1kkoA 413 5.72e+00 c.1.11.2 68675 d.54.1.1 68676 1fnoA 417 6.62e+00 2dabA 282 6.75e+00 1daaA e.17.1.1 43274 1k6wA 426 7.22e+00 b.92.1.2 68236 c.1.9.5 68237 1k32A 1045 7.64e+00 b.36.1.3 68068 b.68.7.1 68069 b.69.9.1 68070 c.14.1.2 68071 1kxrA 339 8.21e+00 1ejjA 511 8.50e+00 1ejjA c.105.1.1 59422 c.76.1.3 59423 3daaA 277 8.80e+00 1daaA e.17.1.1 43272 1qmvA 197 8.81e+00 1qq2A c.47.1.10 33066 1hssA 124 9.09e+00 1bea a.52.1.2 17819 1ayl 541 1.12e+01 1ayl c.91.1.1 64718 c.109.1.1 64719 1gesA 450 1.22e+01 3grs c.3.1.5 30473 c.3.1.5 30474 d.87.1.1 40168 1aqb 183 1.35e+01 1aqb b.60.1.1 27084 1dk8A 147 1.36e+01 1agrE a.91.1.1 18548 1qvbA 481 1.36e+01 1qvbA c.1.8.4 28983 1cr5A 189 1.36e+01 1cr5A b.52.2.3 26931 d.31.1.1 38465 1b3jA 274 1.44e+01 1agdA b.1.1.2 20855 d.19.1.1 38319 1obr 326 1.58e+01 1aye c.56.5.2 33828 1kekA 1231 1.71e+01 c.36.1.4 68524 c.36.1.4 68525 c.48.1.3 68526 c.64.1.1 68527 d.58.1.5 68528 1khvA 516 1.78e+01 e.8.1.4 68627 1cqwA 295 1.85e+01 1b6g c.69.1.8 34679 1ycqA 107 1.88e+01 1ycqA a.42.1.1 17419 1b0pA 1231 1.91e+01 c.36.1.4 31831 c.36.1.4 31832 c.48.1.3 33104 c.64.1.1 34157 d.58.1.5 39003 1f7cA 231 2.04e+01 1f7cA a.116.1.1 19107 1d02A 202 2.05e+01 1d02A c.52.1.8 33313 1bn6A 294 2.25e+01 1bn6A c.69.1.8 34678 1g6sA 427 2.26e+01 1eps d.68.2.2 39584 1fi4A 416 2.27e+01 1fi4A d.14.1.5 59847 d.58.26.2 59848 1daaA 282 2.36e+01 1daaA e.17.1.1 43270 1as8A 343 2.36e+01 1nif b.6.1.3 23074 b.6.1.3 23075 1bn7A 294 2.42e+01 1bn6A c.69.1.8 34677 1d1vA 444 2.42e+01 1nseA d.174.1.1 59101 1l92 164 2.43e+01 1l92 d.2.1.3 36629 1jr3A 373 2.46e+01 a.80.1.1 63245 c.37.1.13 63246 1j9qA 341 2.50e+01 1nif b.6.1.3 62765 b.6.1.3 62766 1jnrA 643 2.69e+01 a.7.3.1 66966 c.3.1.4 66967 d.168.1.1 66968 1l9mA 692 2.73e+01 1fxkA 107 2.73e+01 1fxkA a.2.5.1 15703 1guzA 310 2.76e+01 c.2.1.5 65586 d.162.1.1 65587 1fjgS 93 2.78e+01 1qkfA d.28.1.1 38451 1cwyA 500 2.78e+01 1cwyA c.1.8.1 28789 1eswA 500 2.90e+01 1cwyA c.1.8.1 59500 1im5A 180 2.93e+01 c.33.1.2 66211 1ffyA 917 3.03e+01 1qu2A a.27.1.1 16926 b.51.1.1 26891 c.26.1.1 31593 1qu2A 917 3.03e+01 1qu2A a.27.1.1 16925 b.51.1.1 26890 c.26.1.1 31592 1hwyA 501 3.03e+01 1hwyA c.2.1.7 30262 c.58.1.1 33910 1a2zA 220 3.05e+01 1a2zA c.56.4.1 33794 1fxkB 109 3.05e+01 1fxkA a.2.5.1 15704 1l58 164 3.09e+01 1l92 d.2.1.3 36635 1jvnA 555 3.11e+01 c.1.2.1 67355 c.23.16.1 67356 1hwxA 501 3.16e+01 1hwyA c.2.1.7 30250 c.58.1.1 33898 1hqkA 154 3.21e+01 c.16.1.1 65902 1dy5A 124 3.21e+01 7rsa d.5.1.1 37163 119l 164 3.28e+01 1l92 d.2.1.3 36622 1cmxA 236 3.29e+01 1uch d.3.1.6 37130 1d0cA 444 3.31e+01 d.174.1.1 64769 1aizA 129 3.33e+01 1nwpA b.6.1.1 22903 1jg5A 83 3.35e+01 d.205.1.1 66666 1gpmA 525 3.35e+01 1gpmA c.23.16.1 31405 c.26.2.1 31608 d.52.2.1 38826 3xis 387 3.54e+01 4xis c.1.15.3 29423 1gjuA 637 3.56e+01 b.71.1.1 60580 c.1.8.1 60581 1cewI 108 3.60e+01 1cewI d.17.1.2 37999 1csn 298 3.64e+01 1csn d.144.1.1 41664 1hd7A 318 3.73e+01 1bix d.151.1.1 41780 1arb 268 3.77e+01 1arb b.47.1.1 25766 1nipA 289 3.78e+01 1cp2A c.37.1.10 32263 1gvp 87 3.81e+01 1gvp b.40.4.7 25369 1a4mA 349 3.82e+01 1a4mA c.1.9.1 29014 1rlaA 323 3.87e+01 1d3vA c.42.1.1 32561 1b3rA 431 3.91e+01 1b3rA c.2.1.4 30106 c.23.12.3 31366 1hbq 183 3.92e+01 1aqb b.60.1.1 27078 1gjwA 637 3.93e+01 b.71.1.1 60582 c.1.8.1 60583 1d3vA 323 3.98e+01 1d3vA c.42.1.1 32559