# List of top-scoring protein chains for t2k-100-30-dssp_ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1kkoA 413 1.53e-01 c.1.11.2 68675 d.54.1.1 68676 1jksA 294 6.48e-01 1f7cA 231 1.24e+00 1f7cA a.116.1.1 19107 1k47A 337 1.73e+00 1qo7A 394 1.89e+00 1qo7A c.69.1.11 34697 1cr5A 189 2.88e+00 1cr5A b.52.2.3 26931 d.31.1.1 38465 1k32A 1045 3.07e+00 b.36.1.3 68068 b.68.7.1 68069 b.69.9.1 68070 c.14.1.2 68071 1fnoA 417 3.74e+00 1kkhA 317 3.95e+00 1l92 164 4.11e+00 1l92 d.2.1.3 36629 3daaA 277 4.12e+00 1daaA e.17.1.1 43272 1l58 164 4.13e+00 1l92 d.2.1.3 36635 1daaA 282 4.17e+00 1daaA e.17.1.1 43270 2dabA 282 4.20e+00 1daaA e.17.1.1 43274 119l 164 5.03e+00 1l92 d.2.1.3 36622 1qmvA 197 5.98e+00 1qq2A c.47.1.10 33066 1g38A 393 6.38e+00 2admA c.66.1.10 60235 2admA 421 6.70e+00 2admA c.66.1.10 34238 3mhtA 327 7.41e+00 6mhtA c.66.1.10 34234 1dk8A 147 7.85e+00 1agrE a.91.1.1 18548 1soxA 466 7.87e+00 1soxA b.1.1.5 21947 d.120.1.1 41090 d.176.1.1 42563 1qvbA 481 8.73e+00 1qvbA c.1.8.4 28983 1bn6A 294 9.34e+00 1bn6A c.69.1.8 34678 1cqwA 295 1.03e+01 1b6g c.69.1.8 34679 1kxrA 339 1.05e+01 1bn7A 294 1.12e+01 1bn6A c.69.1.8 34677 1fxkA 107 1.14e+01 1fxkA a.2.5.1 15703 1fcqA 350 1.15e+01 c.1.8.9 65006 1cfr 285 1.16e+01 1cfr c.52.1.7 33312 1fxkB 109 1.31e+01 1fxkA a.2.5.1 15704 1gjwA 637 1.50e+01 b.71.1.1 60582 c.1.8.1 60583 1aqb 183 1.55e+01 1aqb b.60.1.1 27084 1cewI 108 1.59e+01 1cewI d.17.1.2 37999 1gjuA 637 1.59e+01 b.71.1.1 60580 c.1.8.1 60581 1e5eA 404 1.82e+01 1ibjA c.67.1.3 59265 1f5aA 513 1.85e+01 1fa0B d.58.16.1 39337 e.9.1.2 43231 1gpmA 525 1.92e+01 1gpmA c.23.16.1 31405 c.26.2.1 31608 d.52.2.1 38826 1hssA 124 2.03e+01 1bea a.52.1.2 17819 1b3jA 274 2.08e+01 1agdA b.1.1.2 20855 d.19.1.1 38319 1nipA 289 2.15e+01 1cp2A c.37.1.10 32263 1fjgS 93 2.21e+01 1qkfA d.28.1.1 38451 1gcyA 527 2.21e+01 1jdc b.71.1.1 27788 c.1.8.1 28775 1hwyA 501 2.26e+01 1hwyA c.2.1.7 30262 c.58.1.1 33910 1rypI 222 2.27e+01 d.153.1.4 41877 1ky3A 182 2.27e+01 1obr 326 2.37e+01 1aye c.56.5.2 33828 1a2zA 220 2.38e+01 1a2zA c.56.4.1 33794 1ehiA 377 2.47e+01 1iow c.30.1.2 31716 d.142.1.1 41484 1fi4A 416 2.50e+01 1fi4A d.14.1.5 59847 d.58.26.2 59848 1jfgA 374 2.54e+01 a.128.1.5 66636 1gci 269 2.55e+01 1gci c.41.1.1 32503 6mhtA 327 2.61e+01 6mhtA c.66.1.10 34226 1jfaA 374 2.73e+01 a.128.1.5 66622 1jx4A 352 2.92e+01 e.8.1.5 67405 1ffkE 119 2.93e+01 1ffkE d.79.3.1 39812 1fx2A 235 2.95e+01 1fx2A d.58.29.1 39430 1e4cP 215 3.09e+01 2fua c.74.1.1 34969 1kiyA 374 3.11e+01 1ejjA 511 3.16e+01 1ejjA c.105.1.1 59422 c.76.1.3 59423 1i3kA 348 3.26e+01 1xel c.2.1.2 61595 1pysB 785 3.33e+01 1pysB a.6.1.1 16299 a.6.1.1 16300 b.40.4.4 25311 d.58.13.1 39310 d.104.1.1 40779 d.138.1.1 41455 1hqkA 154 3.35e+01 c.16.1.1 65902 1dctA 324 3.41e+01 6mhtA c.66.1.10 34244 1hbq 183 3.60e+01 1aqb b.60.1.1 27078 1pmaP 211 3.76e+01 1pmaP d.153.1.4 41863 1kg0C 136 3.84e+01 2plc 274 3.87e+01 2plc c.1.18.2 29614 1bw0A 416 3.89e+01 1bw0A c.67.1.1 34385 1eqjA 511 3.94e+01 1ejjA c.105.1.1 59495 c.76.1.3 59496 1b7yB 785 3.98e+01 1pysB a.6.1.1 16301 a.6.1.1 16302 b.40.4.4 25312 d.58.13.1 39311 d.104.1.1 40780 d.138.1.1 41456