# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jksA 294 2.70e-01 1gjwA 637 3.90e-01 b.71.1.1 60582 c.1.8.1 60583 1gjuA 637 4.20e-01 b.71.1.1 60580 c.1.8.1 60581 1qo7A 394 4.22e-01 1qo7A c.69.1.11 34697 1kkhA 317 5.18e-01 1qvbA 481 5.30e-01 1qvbA c.1.8.4 28983 1ejjA 511 1.40e+00 1ejjA c.105.1.1 59422 c.76.1.3 59423 1f5aA 513 1.40e+00 1fa0B d.58.16.1 39337 e.9.1.2 43231 1k47A 337 1.72e+00 1e4cP 215 1.95e+00 2fua c.74.1.1 34969 1fcqA 350 2.08e+00 c.1.8.9 65006 1kkoA 413 2.52e+00 c.1.11.2 68675 d.54.1.1 68676 1fua 215 2.53e+00 2fua c.74.1.1 34973 1e5eA 404 2.56e+00 1ibjA c.67.1.3 59265 1eqjA 511 2.61e+00 1ejjA c.105.1.1 59495 c.76.1.3 59496 1fnoA 417 3.07e+00 3mhtA 327 3.53e+00 6mhtA c.66.1.10 34234 1bn6A 294 4.20e+00 1bn6A c.69.1.8 34678 1pbwA 216 4.27e+00 1pbwA a.116.1.1 19103 1soxA 466 4.42e+00 1soxA b.1.1.5 21947 d.120.1.1 41090 d.176.1.1 42563 1d3vA 323 4.55e+00 1d3vA c.42.1.1 32559 2fua 215 4.68e+00 2fua c.74.1.1 34977 1cqwA 295 5.00e+00 1b6g c.69.1.8 34679 1dk8A 147 5.01e+00 1agrE a.91.1.1 18548 1l58 164 5.41e+00 1l92 d.2.1.3 36635 1bn7A 294 5.47e+00 1bn6A c.69.1.8 34677 119l 164 6.93e+00 1l92 d.2.1.3 36622 1l92 164 7.05e+00 1l92 d.2.1.3 36629 1rlaA 323 7.12e+00 1d3vA c.42.1.1 32561 2dabA 282 8.08e+00 1daaA e.17.1.1 43274 3daaA 277 8.25e+00 1daaA e.17.1.1 43272 1daaA 282 8.91e+00 1daaA e.17.1.1 43270 1a2zA 220 9.03e+00 1a2zA c.56.4.1 33794 1fxkA 107 9.86e+00 1fxkA a.2.5.1 15703 1cr5A 189 9.86e+00 1cr5A b.52.2.3 26931 d.31.1.1 38465 1cewI 108 1.02e+01 1cewI d.17.1.2 37999 1qmvA 197 1.04e+01 1qq2A c.47.1.10 33066 1gw9A 388 1.05e+01 1aizA 129 1.05e+01 1nwpA b.6.1.1 22903 1ky3A 182 1.09e+01 6mhtA 327 1.09e+01 6mhtA c.66.1.10 34226 4xis 387 1.11e+01 4xis c.1.15.3 29421 1g6sA 427 1.15e+01 1eps d.68.2.2 39584 1tum 129 1.16e+01 1tum d.113.1.1 40922 1hssA 124 1.18e+01 1bea a.52.1.2 17819 3xis 387 1.18e+01 4xis c.1.15.3 29423 1fx2A 235 1.19e+01 1fx2A d.58.29.1 39430 2xis 387 1.22e+01 4xis c.1.15.3 29427 1fxkB 109 1.24e+01 1fxkA a.2.5.1 15704 1hqkA 154 1.28e+01 c.16.1.1 65902 1nipA 289 1.35e+01 1cp2A c.37.1.10 32263 1d1vA 444 1.37e+01 1nseA d.174.1.1 59101 1ej6D 418 1.38e+01 i.7.1.1 45970 1l9mA 692 1.43e+01 1ed5A 444 1.46e+01 1nseA d.174.1.1 42530 1rypI 222 1.47e+01 d.153.1.4 41877 1kekA 1231 1.51e+01 c.36.1.4 68524 c.36.1.4 68525 c.48.1.3 68526 c.64.1.1 68527 d.58.1.5 68528 1hmy 327 1.55e+01 6mhtA c.66.1.10 34229 2azaA 129 1.61e+01 1nwpA b.6.1.1 22901 1fjgS 93 1.61e+01 1qkfA d.28.1.1 38451 1btl 263 1.73e+01 1btl e.3.1.1 42691 1b0pA 1231 1.83e+01 c.36.1.4 31831 c.36.1.4 31832 c.48.1.3 33104 c.64.1.1 34157 d.58.1.5 39003 1k32A 1045 1.84e+01 b.36.1.3 68068 b.68.7.1 68069 b.69.9.1 68070 c.14.1.2 68071 1i60A 278 1.87e+01 1lba 146 1.88e+01 1lba d.118.1.1 41062 1ddzA 496 1.99e+01 1ddzA c.53.2.1 33372 c.53.2.1 33373 1d02A 202 2.08e+01 1d02A c.52.1.8 33313 1jj2F 119 2.08e+01 1ffkE d.79.3.1 63091 1bw0A 416 2.11e+01 1bw0A c.67.1.1 34385 1a8q 274 2.14e+01 1brt c.69.1.12 34702 1oen 540 2.22e+01 1ayl c.91.1.1 64750 c.109.1.1 64751 2admA 421 2.22e+01 2admA c.66.1.10 34238 1fpzA 212 2.29e+01 1fpzA c.45.1.1 59976 1ehiA 377 2.38e+01 1iow c.30.1.2 31716 d.142.1.1 41484 2stv 195 2.38e+01 2stv b.10.1.2 23287 1gesA 450 2.47e+01 3grs c.3.1.5 30473 c.3.1.5 30474 d.87.1.1 40168 1ycqA 107 2.49e+01 1ycqA a.42.1.1 17419 1hwxA 501 2.50e+01 1hwyA c.2.1.7 30250 c.58.1.1 33898 1gcyA 527 2.50e+01 1jdc b.71.1.1 27788 c.1.8.1 28775 1ffyA 917 2.53e+01 1qu2A a.27.1.1 16926 b.51.1.1 26891 c.26.1.1 31593 1qu2A 917 2.53e+01 1qu2A a.27.1.1 16925 b.51.1.1 26890 c.26.1.1 31592 1ffkD 176 2.62e+01 1ffkD d.77.1.1 39750 1isaA 192 2.64e+01 1avmA a.2.11.1 15731 d.44.1.1 38724 1khvA 516 2.66e+01 e.8.1.4 68627 1l5jA 865 2.76e+01 1iscA 192 2.93e+01 1avmA a.2.11.1 15733 d.44.1.1 38726 1jr3A 373 2.95e+01 a.80.1.1 63245 c.37.1.13 63246 1jvnA 555 3.01e+01 c.1.2.1 67355 c.23.16.1 67356 1i6pA 220 3.02e+01 1ddzA c.53.2.1 61848 1gvp 87 3.07e+01 1gvp b.40.4.7 25369 1g38A 393 3.10e+01 2admA c.66.1.10 60235 1f0yA 302 3.11e+01 2hdhA a.100.1.3 18793 c.2.1.6 30197 1h67A 108 3.17e+01 a.40.1.1 65643 1jruA 89 3.24e+01 1jruA d.15.1.2 63257 1hyeA 313 3.41e+01 2cmd c.2.1.5 61400 d.162.1.1 61401 1udh 244 3.49e+01 3eugA c.18.1.1 31015 1h8uA 117 3.54e+01 1h8uA d.169.1.1 60793 1gdhA 320 3.56e+01 1gdhA c.2.1.4 30095 c.23.12.1 31355 1b93A 152 3.64e+01 1b93A c.24.1.2 31507 1jj2A 239 3.66e+01 1rl2A b.34.5.3 63084 b.40.4.5 63085 2hdhA 293 3.70e+01 2hdhA a.100.1.3 18795 c.2.1.6 30199 1k6wA 426 3.78e+01 b.92.1.2 68236 c.1.9.5 68237 1b7yB 785 3.87e+01 1pysB a.6.1.1 16301 a.6.1.1 16302 b.40.4.4 25312 d.58.13.1 39311 d.104.1.1 40780 d.138.1.1 41456 1arb 268 3.91e+01 1arb b.47.1.1 25766 1rlr 761 3.93e+01 1rlr a.98.1.1 18753 c.7.1.2 30679 1qhhA 167 4.00e+01 1pjr c.37.1.13 32393