PFRMAT SS TARGET T0173 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 6 (1 EBGHTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0173.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 64 METHOD MODEL 1 M C 0.791 S C 0.695 E T 0.458 T T 0.545 P T 0.475 R E 0.787 L E 0.969 L E 0.984 F E 0.981 V E 0.935 H E 0.713 A C 0.588 H C 0.635 P T 0.454 D T 0.539 D T 0.711 E T 0.461 S H 0.631 L H 0.695 S H 0.803 N H 0.911 G H 0.975 A H 0.992 T H 0.999 I H 1.000 A H 1.000 H H 0.999 Y H 0.998 T H 0.996 S H 0.988 R H 0.890 G C 0.919 A C 0.902 Q E 0.531 V E 0.969 H E 0.993 V E 0.995 V E 0.988 T E 0.963 C E 0.800 T E 0.484 L C 0.495 G T 0.519 E T 0.577 E T 0.555 G T 0.615 E T 0.526 V C 0.417 I C 0.492 G C 0.548 D H 0.385 R H 0.481 W H 0.508 A H 0.482 Q H 0.383 L T 0.388 T T 0.495 A T 0.554 D T 0.524 H T 0.461 A H 0.452 D H 0.483 Q H 0.584 L H 0.727 G H 0.784 G H 0.894 Y H 0.874 R H 0.888 I H 0.969 G H 0.970 E H 0.983 L H 0.995 T H 0.995 A H 0.996 A H 0.997 L H 0.991 R H 0.974 A H 0.953 L H 0.817 G C 0.960 V C 0.838 S C 0.743 A T 0.353 P E 0.317 I E 0.284 Y E 0.411 L C 0.316 G T 0.420 G T 0.606 A T 0.589 G T 0.526 R T 0.390 W C 0.554 R C 0.483 D T 0.431 S T 0.467 G T 0.336 M E 0.367 A E 0.346 G E 0.308 T C 0.362 D T 0.378 Q T 0.406 R T 0.574 S T 0.701 Q T 0.705 R T 0.679 R T 0.433 F T 0.323 V T 0.317 D C 0.369 A C 0.499 D C 0.748 P H 0.920 R H 0.961 Q H 0.977 T H 0.989 V H 0.998 G H 0.997 A H 0.998 L H 0.999 V H 0.998 A H 0.997 I H 0.997 I H 0.994 R H 0.985 E H 0.941 L H 0.566 R T 0.607 P T 0.754 H T 0.698 V E 0.952 V E 0.981 V E 0.983 T E 0.958 Y E 0.723 D T 0.570 P T 0.791 N T 0.903 G T 0.900 G T 0.473 Y T 0.477 G T 0.519 H C 0.452 P H 0.556 D H 0.725 H H 0.960 V H 0.994 H H 0.996 T H 0.997 H H 0.998 T H 0.998 V H 0.998 T H 0.997 T H 0.995 A H 0.994 A H 0.992 V H 0.976 A H 0.954 A H 0.915 A H 0.804 G C 0.483 V T 0.413 G T 0.377 S T 0.363 G T 0.332 T C 0.342 A T 0.362 D T 0.412 H T 0.456 P T 0.480 G T 0.459 D T 0.443 P T 0.412 W T 0.417 T C 0.418 V C 0.313 P E 0.368 K E 0.660 F E 0.733 Y E 0.758 W E 0.795 T E 0.742 V E 0.611 L E 0.314 G C 0.392 L T 0.335 S H 0.484 A H 0.627 L H 0.665 I H 0.648 S H 0.657 G H 0.643 A H 0.667 R H 0.658 A H 0.651 L H 0.685 V H 0.607 P H 0.534 D H 0.385 D T 0.423 L T 0.416 R T 0.432 P T 0.426 E T 0.480 W T 0.434 V C 0.367 L T 0.393 P T 0.356 R T 0.320 A T 0.321 D C 0.361 E T 0.338 I C 0.330 A T 0.459 F T 0.476 G T 0.477 Y T 0.478 S T 0.419 D T 0.426 D T 0.452 G C 0.395 I C 0.449 D C 0.411 A E 0.488 V E 0.847 V E 0.925 E E 0.891 A E 0.510 D H 0.490 E H 0.499 Q H 0.628 A H 0.834 R H 0.949 A H 0.972 A H 0.981 K H 0.997 V H 0.999 A H 0.999 A H 0.999 L H 0.998 A H 0.993 A H 0.971 H H 0.871 A H 0.722 T H 0.514 Q T 0.445 V T 0.440 V T 0.477 V C 0.376 G C 0.406 P T 0.410 T T 0.347 G T 0.295 R H 0.296 A E 0.379 A E 0.492 A E 0.548 L E 0.444 S C 0.283 N H 0.418 N H 0.410 L H 0.444 A H 0.386 L H 0.369 P H 0.328 I H 0.298 L C 0.322 A C 0.325 D E 0.349 E E 0.397 H E 0.456 Y E 0.602 V E 0.654 L E 0.597 A E 0.338 G T 0.391 G T 0.407 S C 0.422 A C 0.399 G C 0.443 A C 0.419 R C 0.440 D C 0.459 E C 0.495 R C 0.551 G C 0.565 W C 0.417 E G 0.391 T G 0.535 D G 0.448 L T 0.369 L T 0.323 A E 0.346 G E 0.559 L E 0.653 G E 0.710 F E 0.491 T T 0.548 A T 0.671 S T 0.636 G C 0.468 T C 0.968 END