// Try packing helix into slot Constraint I52.CB V184.CB 0 3 6 Constraint I54.CB V187.CB 0 3 6 // add constraints to make gap near G236 look bad constraint G236.CA G237.CA 0 3 4 constraint G237.CA R238.CA 0 3 4 constraint R238.CA I239.CA 0 3 4 constraint I239.CB L226.CG 0 4 6 constraint V241.CB L222.CG 0 4 6 // and helix length constraints constraint L219.CA L233.CA 19 21 24 constraint A204.CA N216.CA 19 21 24 // try adding a parallel connection constraint F118.CB R289.CB 4 5.12 7 constraint T119.CB A290.CB 4 5.12 7 constraint F120.CB A291.CB 4 5.12 7 constraint E121.CB E292.CB 4 5.12 7 // parallel strands constraint I51.N R74.O 2.3 2.7 3.2 constraint I51.O S76.N 2.3 2.7 3.2 constraint G53.N S76.O 2.3 2.7 3.2 constraint G53.O F78.N 2.3 2.7 3.2 constraint D55.N F78.O 2.3 2.7 3.2 // Add straightness constraints for other strands: constraint R238.CB I242.CB 14 14.6 16 constraint I239.CB S243.CB 14 14.6 16 constraint R263.CB E267.CB 14 14.6 16 constraint L288.CB E292.CB 14 14.6 16 // Let's try this alignment: // 98> DGILMD // 238> RIVVIS // 263> RILTEK // 287> RLRAAE constraint D98.O R238.N 2.3 2.7 3.2 constraint I100.N R238.O 2.3 2.7 3.2 constraint I100.O V240.N 2.3 2.7 3.2 constraint M102.N V240.O 2.3 2.7 3.2 constraint M102.O I242.N 2.3 2.7 3.2 constraint I239.N R263.O 2.3 2.7 3.2 constraint I239.O L265.N 2.3 2.7 3.2 constraint V241.N L265.O 2.3 2.7 3.2 constraint V241.O E267.N 2.3 2.7 3.2 constraint S243.N E267.O 2.3 2.7 3.2 constraint I264.N R287.O 2.3 2.7 3.2 constraint I264.O R289.N 2.3 2.7 3.2 constraint T266.N R289.O 2.3 2.7 3.2 constraint T266.O A291.N 2.3 2.7 3.2 constraint K268.N A291.O 2.3 2.7 3.2