// alignments for the middle region

Infileprefix	t0172-106-222/1ecmA/
    include read-alignments.under 
Infileprefix	t0172-106-222/1lo0Y/
    include read-alignments.under 
Infileprefix	t0172-106-222/1hyeA/
    include read-alignments.under 
Infileprefix	t0172-106-222/1aeiA/
    include read-alignments.under 
Infileprefix	t0172-106-222/1k2pA/
    include read-alignments.under 
Infileprefix	t0172-106-222/1cwyA/
    include read-alignments.under 
Infileprefix	t0172-106-222/1eswA/
    include read-alignments.under 
Infileprefix	t0172-106-222/1f51F/
    include read-alignments.under 
Infileprefix	t0172-106-222/1ao6A/
    include read-alignments.under 
Infileprefix	t0172-106-222/1d4gA/
    include read-alignments.under 

InfilePrefix