PFRMAT SS
TARGET T0172
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0172.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 258
METHOD
MODEL 1
M E 0.197
R E 0.243
K E 0.175
Y B 0.228
S E 0.203
Q B 0.157
R H 0.239
H S 0.229
I H 0.325
P H 0.738
V H 0.829
M H 0.907
V H 0.914
R H 0.924
E H 0.938
V H 0.902
I H 0.808
E H 0.792
F H 0.529
L B 0.382
K A 0.226
P B 0.314
E C 0.372
D G 0.454
E S 0.585
K B 0.441
I E 0.696
I E 0.622
L E 0.633
D A 0.450
C S 0.287
T E 0.149
V S 0.197
G D 0.233
E H 0.203
G H 0.267
G H 0.670
H H 0.825
S H 0.886
R H 0.924
A H 0.939
I H 0.832
L H 0.659
E H 0.689
H S 0.314
C A 0.389
P G 0.325
G S 0.662
C E 0.401
R E 0.656
I A 0.522
I E 0.461
G E 0.604
I E 0.348
D E 0.565
V B 0.341
D E 0.476
S I 0.502
E H 0.887
V H 0.899
L H 0.956
R H 0.960
I H 0.959
A H 0.910
E H 0.901
E H 0.893
K H 0.641
L H 0.579
K H 0.676
E H 0.549
F B 0.277
S D 0.216
D S 0.272
R E 0.325
V E 0.493
S E 0.640
L E 0.473
F E 0.425
K E 0.289
V B 0.209
S A 0.222
Y I 0.487
R H 0.531
E S 0.376
A H 0.309
D H 0.422
F H 0.506
L H 0.462
L H 0.490
K H 0.542
T H 0.438
L B 0.526
G S 0.422
I E 0.260
E E 0.211
K E 0.215
V A 0.360
D G 0.576
G E 0.545
I E 0.649
L E 0.491
M E 0.328
D E 0.213
L B 0.161
G B 0.241
V E 0.202
S I 0.190
T H 0.256
Y H 0.205
Q S 0.156
L H 0.221
K H 0.203
G H 0.248
E H 0.490
N H 0.409
R B 0.409
G S 0.294
F E 0.334
T E 0.328
F E 0.189
E B 0.168
R B 0.195
E S 0.208
E C 0.288
P B 0.204
L B 0.190
D E 0.227
M E 0.159
R E 0.270
M B 0.446
D E 0.337
L H 0.444
E S 0.246
S S 0.238
E S 0.326
V B 0.590
T B 0.718
A H 0.638
Q H 0.863
K H 0.842
V H 0.835
L H 0.552
N H 0.486
E S 0.375
L B 0.427
P B 0.454
E H 0.728
E H 0.873
E H 0.878
L H 0.865
A H 0.883
R H 0.911
I H 0.919
I H 0.837
F H 0.781
E H 0.702
Y B 0.333
G S 0.196
E H 0.386
E H 0.476
K H 0.598
R H 0.717
F H 0.729
A H 0.807
R H 0.894
R H 0.936
I H 0.941
A H 0.937
R H 0.941
K H 0.933
I H 0.842
V H 0.735
E H 0.613
N H 0.260
R B 0.392
P S 0.210
L E 0.203
N H 0.363
T H 0.321
T H 0.773
L H 0.919
D H 0.952
L H 0.950
V H 0.960
K H 0.968
A H 0.965
V H 0.864
R H 0.824
E H 0.762
A H 0.332
L B 0.216
P H 0.182
S H 0.227
Y H 0.351
E H 0.374
I H 0.296
R H 0.324
R H 0.242
R H 0.216
K S 0.160
R C 0.182
H E 0.289
F H 0.437
A H 0.666
T H 0.790
K H 0.830
T H 0.878
F H 0.909
Q H 0.936
A H 0.948
I H 0.934
R H 0.921
I H 0.904
Y H 0.852
V H 0.728
N H 0.635
R H 0.426
E H 0.321
L H 0.511
E H 0.748
N H 0.742
L H 0.874
K H 0.925
E H 0.929
F H 0.903
L H 0.888
K H 0.907
K H 0.892
A H 0.763
E H 0.713
D H 0.695
L S 0.578
L B 0.445
N C 0.728
P G 0.800
G S 0.784
G B 0.635
R E 0.758
I E 0.702
V E 0.764
V E 0.569
I E 0.395
S E 0.431
F E 0.285
H B 0.238
S B 0.331
L H 0.466
E H 0.415
D H 0.509
R H 0.768
I H 0.864
V H 0.875
K H 0.908
E H 0.922
T H 0.866
F H 0.720
R H 0.798
N H 0.393
S E 0.237
K H 0.389
K H 0.389
L S 0.200
R E 0.304
I E 0.390
L E 0.307
T E 0.250
E S 0.196
K C 0.480
P B 0.439
V E 0.325
R B 0.431
P B 0.370
S B 0.637
E H 0.668
E H 0.888
E H 0.786
I H 0.755
R H 0.696
E S 0.345
N A 0.295
P H 0.433
R H 0.304
A S 0.265
R H 0.271
S E 0.274
G E 0.385
R E 0.587
L E 0.557
R E 0.537
A A 0.421
A E 0.317
E E 0.389
R E 0.274
I E 0.209
E H 0.190
E B 0.203
G S 0.181
G S 0.182
D E 0.221
END