PFRMAT SS TARGET T0171 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 6 (1 EBGHTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0171.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 704 METHOD MODEL 1 M C 0.671 N E 0.541 N E 0.900 I E 0.963 W E 0.969 W E 0.964 Q E 0.933 T E 0.848 K E 0.443 G C 0.487 Q T 0.578 G C 0.523 N C 0.443 V C 0.604 H E 0.801 L E 0.990 V E 0.995 L E 0.990 L E 0.956 H E 0.513 G C 0.602 W C 0.491 G T 0.650 L T 0.638 N T 0.540 A T 0.384 E H 0.538 V H 0.620 W H 0.828 R H 0.890 C H 0.911 I H 0.938 D H 0.906 E H 0.847 E H 0.736 L H 0.727 S H 0.501 S T 0.613 H T 0.765 F T 0.457 T E 0.792 L E 0.991 H E 0.995 L E 0.988 V E 0.931 D E 0.502 L T 0.681 P T 0.764 G T 0.812 F T 0.642 G T 0.447 R T 0.452 S T 0.481 R T 0.445 G T 0.475 F T 0.488 G C 0.435 A C 0.487 L C 0.516 S C 0.695 L H 0.951 A H 0.972 D H 0.977 M H 0.985 A H 0.982 E H 0.962 A H 0.947 V H 0.935 L H 0.871 Q H 0.711 Q H 0.390 A C 0.535 P T 0.479 D C 0.464 K E 0.485 A E 0.963 I E 0.992 W E 0.995 L E 0.982 G E 0.889 W E 0.555 S C 0.634 L H 0.728 G H 0.972 G H 0.997 L H 0.998 V H 0.999 A H 0.999 S H 0.999 Q H 0.998 I H 0.997 A H 0.990 L H 0.966 T H 0.864 H C 0.474 P T 0.416 E G 0.463 R G 0.621 V E 0.322 Q E 0.502 A E 0.906 L E 0.974 V E 0.983 T E 0.978 V E 0.890 A E 0.460 S C 0.459 S C 0.464 P C 0.437 C T 0.394 F T 0.413 S T 0.408 A T 0.399 R T 0.359 D H 0.311 E H 0.379 W H 0.452 P H 0.498 G H 0.537 I H 0.493 K H 0.614 P H 0.732 D H 0.758 V H 0.798 L H 0.800 A H 0.814 G H 0.806 F H 0.728 Q H 0.736 Q H 0.699 Q H 0.581 L H 0.507 S H 0.490 D H 0.523 D H 0.499 F H 0.739 Q H 0.806 R H 0.795 T H 0.828 V H 0.826 E H 0.827 R H 0.782 F H 0.710 L H 0.694 A H 0.652 L H 0.484 Q H 0.403 T H 0.314 M T 0.361 G T 0.398 T T 0.431 E T 0.397 T C 0.525 A C 0.642 R H 0.832 Q H 0.864 D H 0.901 A H 0.930 R H 0.928 A H 0.933 L H 0.879 K H 0.893 K H 0.854 T H 0.777 V H 0.636 L H 0.499 A H 0.380 L C 0.364 P C 0.334 M H 0.453 P H 0.520 E H 0.581 V H 0.825 D H 0.881 V H 0.909 L H 0.910 N H 0.911 G H 0.909 G H 0.898 L H 0.862 E H 0.827 I H 0.806 L H 0.706 K H 0.612 T H 0.464 V H 0.448 D H 0.464 L H 0.593 R H 0.591 Q H 0.523 P H 0.476 L H 0.388 Q T 0.296 N T 0.337 V C 0.499 S C 0.728 M C 0.682 P C 0.655 F E 0.946 L E 0.988 R E 0.986 L E 0.958 Y E 0.709 G C 0.455 Y T 0.555 L T 0.548 D T 0.762 G T 0.715 L T 0.624 V T 0.594 P C 0.562 R H 0.677 K H 0.774 V H 0.854 V H 0.901 P H 0.935 M H 0.932 L H 0.935 D H 0.895 K H 0.885 L H 0.719 W T 0.808 P T 0.888 H T 0.922 S T 0.695 E E 0.790 S E 0.978 Y E 0.976 I E 0.910 F E 0.599 A T 0.701 K T 0.812 A T 0.753 A T 0.530 H C 0.407 A T 0.404 P T 0.295 F G 0.389 I T 0.343 S T 0.352 H C 0.578 P H 0.965 A H 0.977 E H 0.991 F H 0.994 C H 0.996 H H 0.996 L H 0.994 L H 0.990 V H 0.976 A H 0.940 L H 0.973 K H 0.947 Q H 0.828 R H 0.514 V C 0.892 END