PFRMAT SS TARGET T0171 AUTHOR 4069-6308-1312 METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 7 (1 EBGHSTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0171.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 704 METHOD MODEL 1 M C 0.998 N C 0.756 N E 0.799 I E 0.949 W E 0.963 W E 0.950 Q E 0.915 T E 0.770 K C 0.399 G C 0.400 Q S 0.388 G S 0.544 N S 0.508 V C 0.640 H E 0.782 L E 0.990 V E 0.997 L E 0.995 L E 0.950 H E 0.540 G C 0.557 W C 0.343 G T 0.349 L T 0.369 N T 0.283 A H 0.472 E H 0.524 V H 0.562 W H 0.825 R H 0.921 C H 0.906 I H 0.909 D H 0.898 E H 0.829 E H 0.760 L H 0.692 S H 0.466 S T 0.611 H T 0.867 F C 0.631 T E 0.558 L E 0.983 H E 0.991 L E 0.983 V E 0.938 D E 0.509 L C 0.565 P S 0.314 G S 0.264 F C 0.385 G S 0.328 R C 0.415 S C 0.355 R C 0.407 G C 0.523 F C 0.703 G C 0.668 A C 0.610 L C 0.571 S C 0.703 L H 0.959 A H 0.967 D H 0.973 M H 0.983 A H 0.976 E H 0.947 A H 0.939 V H 0.917 L H 0.853 Q H 0.637 Q T 0.641 A T 0.720 P C 0.973 D C 0.817 K E 0.468 A E 0.923 I E 0.986 W E 0.991 L E 0.939 G E 0.588 W C 0.527 S C 0.496 L H 0.790 G H 0.938 G H 0.985 L H 0.996 V H 0.996 A H 0.996 S H 0.996 Q H 0.995 I H 0.991 A H 0.982 L H 0.916 T H 0.820 H C 0.479 P H 0.496 E T 0.420 R G 0.400 V E 0.388 Q E 0.687 A E 0.906 L E 0.957 V E 0.981 T E 0.919 V E 0.793 A E 0.481 S C 0.499 S C 0.496 P C 0.453 C C 0.441 F C 0.381 S C 0.347 A C 0.333 R C 0.345 D C 0.317 E H 0.328 W H 0.382 P H 0.441 G H 0.496 I H 0.513 K H 0.611 P H 0.778 D H 0.788 V H 0.797 L H 0.790 A H 0.758 G H 0.713 F H 0.655 Q H 0.615 Q H 0.544 Q H 0.436 L H 0.394 S H 0.399 D H 0.465 D H 0.489 F H 0.695 Q H 0.799 R H 0.812 T H 0.836 V H 0.846 E H 0.819 R H 0.785 F H 0.737 L H 0.695 A H 0.622 L H 0.509 Q H 0.414 T H 0.342 M H 0.283 G C 0.248 T T 0.244 E C 0.296 T C 0.515 A C 0.696 R H 0.907 Q H 0.936 D H 0.957 A H 0.975 R H 0.972 A H 0.969 L H 0.963 K H 0.937 K H 0.870 T H 0.777 V H 0.603 L H 0.434 A H 0.341 L H 0.332 P H 0.302 M H 0.327 P H 0.367 E H 0.510 V H 0.770 D H 0.842 V H 0.859 L H 0.882 N H 0.884 G H 0.864 G H 0.839 L H 0.809 E H 0.752 I H 0.680 L H 0.572 K H 0.469 T H 0.414 V H 0.464 D H 0.416 L H 0.509 R H 0.602 Q H 0.596 P H 0.611 L H 0.437 Q T 0.387 N T 0.519 V C 0.549 S C 0.554 M S 0.612 P C 0.708 F E 0.915 L E 0.994 R E 0.995 L E 0.986 Y E 0.778 G C 0.504 Y T 0.357 L T 0.355 D C 0.484 G T 0.363 L S 0.263 V C 0.469 P C 0.855 R H 0.747 K H 0.843 V H 0.876 V H 0.957 P H 0.963 M H 0.965 L H 0.968 D H 0.930 K H 0.782 L H 0.610 W C 0.592 P T 0.755 H T 0.858 S C 0.572 E E 0.785 S E 0.962 Y E 0.968 I E 0.944 F E 0.689 A T 0.656 K T 0.822 A C 0.480 A C 0.380 H C 0.309 A C 0.457 P C 0.351 F G 0.230 I H 0.327 S H 0.355 H C 0.344 P H 0.893 A H 0.954 E H 0.968 F H 0.989 C H 0.992 H H 0.993 L H 0.992 L H 0.993 V H 0.992 A H 0.978 L H 0.951 K H 0.854 Q H 0.487 R T 0.510 V C 0.961 END