PFRMAT SS
TARGET T0171
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0171.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 704
METHOD
MODEL 1
M S 0.373
N E 0.463
N E 0.595
I E 0.515
W E 0.600
W A 0.441
Q E 0.409
T A 0.448
K B 0.246
G D 0.448
Q C 0.173
G C 0.225
N B 0.291
V B 0.420
H E 0.656
L E 0.719
V E 0.709
L E 0.591
L A 0.391
H S 0.202
G B 0.149
W D 0.127
G S 0.190
L H 0.161
N S 0.246
A H 0.345
E H 0.408
V H 0.448
W H 0.512
R H 0.731
C H 0.863
I H 0.682
D H 0.679
E H 0.783
E H 0.704
L H 0.529
S H 0.558
S H 0.389
H S 0.549
F E 0.453
T E 0.650
L E 0.565
H E 0.651
L E 0.585
V E 0.415
D E 0.242
L B 0.208
P G 0.207
G S 0.184
F B 0.150
G S 0.181
R S 0.227
S E 0.168
R S 0.196
G C 0.232
F B 0.241
G B 0.191
A B 0.172
L B 0.207
S B 0.520
L H 0.702
A H 0.917
D H 0.948
M H 0.931
A H 0.887
E H 0.925
A H 0.895
V H 0.778
L H 0.688
Q H 0.533
Q B 0.530
A T 0.355
P E 0.270
D G 0.184
K A 0.349
A E 0.594
I E 0.773
W A 0.528
L E 0.316
G E 0.342
W A 0.124
S H 0.189
L H 0.569
G H 0.695
G H 0.848
L H 0.950
V H 0.969
A H 0.958
S H 0.955
Q H 0.962
I H 0.912
A H 0.741
L H 0.727
T G 0.451
H A 0.512
P I 0.619
E H 0.481
R S 0.519
V A 0.239
Q G 0.328
A E 0.309
L E 0.623
V E 0.750
T E 0.499
V S 0.198
A E 0.248
S B 0.231
S B 0.231
P B 0.168
C B 0.177
F H 0.160
S H 0.194
A H 0.163
R H 0.194
D H 0.224
E H 0.241
W H 0.249
P H 0.289
G H 0.354
I H 0.321
K H 0.443
P H 0.640
D H 0.653
V H 0.655
L H 0.623
A H 0.638
G H 0.553
F H 0.516
Q H 0.475
Q H 0.387
Q H 0.315
L H 0.252
S H 0.259
D H 0.410
D H 0.339
F H 0.562
Q H 0.728
R H 0.704
T H 0.720
V H 0.678
E H 0.677
R H 0.583
F H 0.562
L H 0.493
A H 0.377
L H 0.324
Q H 0.356
T H 0.267
M H 0.182
G H 0.209
T H 0.272
E H 0.231
T B 0.290
A B 0.451
R H 0.774
Q H 0.888
D H 0.898
A H 0.923
R H 0.927
A H 0.903
L H 0.865
K H 0.780
K H 0.738
T H 0.566
V H 0.398
L H 0.352
A H 0.193
L H 0.211
P H 0.219
M H 0.274
P H 0.360
E H 0.340
V H 0.662
D H 0.761
V H 0.783
L H 0.812
N H 0.795
G H 0.799
G H 0.738
L H 0.689
E H 0.663
I H 0.576
L H 0.444
K H 0.393
T H 0.278
V H 0.307
D H 0.308
L H 0.396
R H 0.582
Q H 0.659
P H 0.497
L H 0.311
Q H 0.519
N S 0.397
V E 0.450
S E 0.217
M B 0.313
P E 0.524
F E 0.725
L E 0.712
R E 0.643
L E 0.398
Y E 0.241
G C 0.272
Y H 0.347
L S 0.375
D E 0.410
G I 0.315
L S 0.224
V B 0.412
P B 0.474
R H 0.582
K H 0.855
V H 0.832
V H 0.911
P H 0.934
M H 0.936
L H 0.816
D H 0.662
K H 0.655
L S 0.326
W A 0.304
P H 0.298
H S 0.591
S E 0.412
E E 0.511
S E 0.573
Y E 0.712
I E 0.518
F B 0.266
A G 0.401
K S 0.382
A B 0.250
A S 0.156
H E 0.167
A E 0.171
P B 0.254
F I 0.294
I H 0.456
S H 0.307
H E 0.312
P H 0.614
A H 0.884
E H 0.892
F H 0.884
C H 0.927
H H 0.933
L H 0.951
L H 0.886
V H 0.896
A H 0.936
L H 0.791
K H 0.605
Q H 0.729
R H 0.461
V H 0.205
END