# TARGET T0170 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0170.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 30 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 Q 0.006 0.003 0.007 0.192 0.099 0.693 2 P 0.006 0.004 0.016 0.658 0.075 0.241 3 A 0.003 0.002 0.019 0.818 0.070 0.088 4 K 0.002 0.001 0.017 0.839 0.079 0.062 5 K 0.002 0.001 0.011 0.734 0.145 0.107 6 T 0.001 0.001 0.011 0.670 0.192 0.125 7 Y 0.001 0.003 0.013 0.617 0.233 0.133 8 T 0.001 0.002 0.012 0.568 0.231 0.187 9 W 0.001 0.001 0.010 0.575 0.210 0.203 10 N 0.001 0.001 0.007 0.452 0.221 0.318 11 T 0.001 0.001 0.007 0.448 0.164 0.378 12 K 0.001 0.001 0.006 0.864 0.051 0.078 13 E 0.001 0.001 0.004 0.914 0.037 0.043 14 E 0.001 0.001 0.004 0.945 0.020 0.029 15 A 0.001 0.001 0.003 0.932 0.014 0.049 16 K 0.001 0.001 0.001 0.989 0.003 0.007 17 Q 0.001 0.001 0.001 0.992 0.003 0.005 18 A 0.001 0.001 0.001 0.995 0.001 0.002 19 F 0.001 0.001 0.001 0.996 0.001 0.002 20 K 0.001 0.001 0.001 0.998 0.001 0.001 21 E 0.001 0.001 0.001 0.997 0.002 0.001 22 L 0.001 0.001 0.001 0.997 0.002 0.001 23 L 0.001 0.001 0.001 0.995 0.003 0.001 24 K 0.001 0.001 0.005 0.985 0.007 0.003 25 E 0.001 0.001 0.010 0.944 0.023 0.021 26 K 0.001 0.001 0.018 0.782 0.057 0.141 27 R 0.003 0.003 0.002 0.019 0.074 0.898 28 V 0.015 0.060 0.003 0.006 0.115 0.801 29 P 0.016 0.040 0.005 0.006 0.849 0.083 30 S 0.006 0.002 0.022 0.021 0.916 0.033 31 N 0.009 0.003 0.014 0.011 0.898 0.064 32 A 0.035 0.130 0.005 0.020 0.690 0.121 33 S 0.026 0.021 0.001 0.049 0.047 0.856 34 W 0.001 0.001 0.009 0.972 0.007 0.009 35 E 0.001 0.001 0.012 0.977 0.008 0.003 36 Q 0.001 0.001 0.012 0.979 0.007 0.001 37 A 0.001 0.001 0.003 0.990 0.005 0.002 38 M 0.001 0.001 0.004 0.991 0.004 0.001 39 K 0.001 0.001 0.012 0.971 0.014 0.003 40 M 0.001 0.001 0.014 0.964 0.016 0.006 41 I 0.001 0.003 0.014 0.934 0.035 0.013 42 I 0.001 0.001 0.013 0.897 0.059 0.029 43 N 0.002 0.001 0.006 0.625 0.143 0.222 44 D 0.007 0.002 0.009 0.181 0.292 0.508 45 P 0.014 0.007 0.053 0.548 0.226 0.152 46 R 0.033 0.012 0.143 0.530 0.201 0.081 47 Y 0.042 0.007 0.259 0.484 0.152 0.056 48 S 0.076 0.015 0.249 0.487 0.110 0.064 49 A 0.120 0.010 0.146 0.477 0.124 0.123 50 L 0.107 0.010 0.104 0.468 0.156 0.155 51 A 0.057 0.010 0.061 0.303 0.207 0.363 52 N 0.032 0.006 0.021 0.167 0.222 0.552 53 L 0.006 0.002 0.076 0.542 0.187 0.187 54 S 0.003 0.002 0.090 0.739 0.106 0.060 55 E 0.001 0.001 0.122 0.803 0.059 0.014 56 K 0.001 0.001 0.038 0.917 0.027 0.015 57 K 0.001 0.001 0.025 0.942 0.021 0.010 58 Q 0.001 0.001 0.023 0.941 0.020 0.015 59 A 0.001 0.002 0.020 0.944 0.015 0.018 60 F 0.001 0.001 0.010 0.972 0.007 0.009 61 N 0.002 0.001 0.005 0.979 0.007 0.008 62 A 0.001 0.001 0.005 0.981 0.007 0.006 63 Y 0.003 0.001 0.003 0.980 0.007 0.006 64 K 0.005 0.001 0.006 0.968 0.012 0.009 65 V 0.006 0.001 0.008 0.956 0.016 0.014 66 Q 0.009 0.001 0.014 0.906 0.029 0.041 67 T 0.018 0.008 0.014 0.793 0.043 0.125 68 E 0.017 0.007 0.010 0.351 0.070 0.545 69 K 0.001 0.001 0.001 0.023 0.034 0.940