% (null) % (c) 1992-2001 Regents of the University of California, Santa Cruz % % Sequence Alignment and Modeling Software System % http://www.cse.ucsc.edu/research/compbio/sam.html % % ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- % R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: % Extension and analysis of the basic method, CABIOS 12:95-107, 1996. % K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting % remote protein homologies, Bioinformatics 14(10):846-856, 1998. % A. Krogh et al., Hidden Markov models in computational biology: % Applications to protein modeling, JMB 235:1501-1531, Feb 1994. % --------------------------------------------------------------------- % T0170.t2k Host: cc55 Mon Aug 12 05:37:56 2002 % karplus Dir: /projects/compbio/experiments/casp5/t0170 % --------------------------------------------------------------------- % Sequence-model (global) (SW = 0) % Track 0 Coeff 1.000 File T0170.t2k-w0.5.mod % Track 1 Coeff 0.300 File T0170.t2k.str.mod 5csmA.1.0 256 -107.29 -107.29 1csmA.1.0 256 -106.80 -106.80 5csmA.1.1 256 -106.13 -106.13 1csmA.1.1 256 -105.88 -105.88 1g4yR.1.0 148 -96.89 -96.89 1ytc.1.0 112 -96.57 -96.57 1csmA.2.2 256 -105.85 -105.85 5csmA.2.2 256 -105.84 -105.84 1hs7A.2.2 97 -101.42 -101.42 1nkd.2.2 65 -101.39 -101.39 1rpo.2.2 65 -101.36 -101.36 5csmA.2.1 256 -100.36 -100.36 5csmA.3.3 256 -106.34 -106.34 1csmA.3.3 256 -106.31 -106.31 5csmA.3.2 256 -100.88 -100.88 1csmA.3.2 256 -100.05 -100.05 1klpA.3.3 115 -99.38 -99.38 1nkd.3.3 65 -98.14 -98.14 5csmA.4.4 256 -105.30 -105.30 1csmA.4.4 256 -105.29 -105.29 5csmA.4.3 256 -101.86 -101.86 1csmA.4.3 256 -100.81 -100.81 1klpA.4.4 115 -99.48 -99.48 1ytc.4.4 112 -97.69 -97.69 5csmA.5.5 256 -104.68 -104.68 1csmA.5.5 256 -104.60 -104.60 1ytc.5.5 112 -101.89 -101.89 5csmA.5.4 256 -101.85 -101.85 1csmA.5.4 256 -100.57 -100.57 1klpA.5.5 115 -99.60 -99.60 1ytc.6.6 112 -108.15 -108.15 1csmA.6.6 256 -104.94 -104.94 5csmA.6.6 256 -104.90 -104.90 1dnlA.6.6 199 -101.47 -101.47 5csmA.6.5 256 -101.21 -101.21 1csmA.6.5 256 -99.89 -99.89 1ytc.7.7 112 -113.40 -113.40 5csmA.7.7 256 -106.18 -106.18 1csmA.7.7 256 -105.82 -105.82 1mntA.7.7 76 -104.70 -104.70 1e2o.7.7 233 -104.31 -104.31 1dnlA.7.7 199 -102.91 -102.91 1ytc.8.8 112 -114.93 -114.93 1mntA.8.8 76 -108.40 -108.40 1e2o.8.8 233 -106.84 -106.84 5csmA.8.8 256 -105.31 -105.31 1csmA.8.8 256 -104.54 -104.54 1dnlA.8.8 199 -103.39 -103.39 1ytc.9.9 112 -114.08 -114.08 1jbeA.9.9 128 -109.57 -109.57 1mntA.9.9 76 -109.00 -109.00 3chy.9.9 128 -108.95 -108.95 1e2o.9.9 233 -108.60 -108.60 1e6mA.9.9 128 -107.99 -107.99 1e2o.10.10 233 -111.24 -111.24 1mntA.10.10 76 -110.36 -110.36 1jbeA.10.10 128 -110.18 -110.18 1ytc.10.10 112 -110.09 -110.09 3chy.10.10 128 -109.46 -109.46 1a8o.10.8 70 -109.18 -109.18 1jbeA.11.11 128 -115.57 -115.57 3chy.11.11 128 -114.74 -114.74 1e6mA.11.11 128 -113.98 -113.98 1a8o.11.9 70 -113.28 -113.28 1e2o.11.11 233 -112.84 -112.84 1dl5A.11.13 317 -112.61 -112.61 1dl5A.12.14 317 -120.28 -120.28 1eiwA.12.12 111 -119.78 -119.78 1a8o.12.10 70 -117.63 -117.63 1e2o.12.12 233 -115.61 -115.61 1dlxA.12.12 120 -115.32 -115.32 1abrA.12.12 251 -115.31 -115.31 1eiwA.13.13 111 -126.84 -126.84 4ts1A.13.15 319 -121.04 -121.04 1dl5A.13.15 317 -120.58 -120.58 2ts1.13.15 419 -119.86 -119.86 1abrA.13.13 251 -119.33 -119.33 1a8o.13.11 70 -119.16 -119.16 1eiwA.14.14 111 -134.12 -134.12 4ts1A.14.16 319 -131.14 -131.14 2ts1.14.16 419 -130.22 -130.22 1abrA.14.14 251 -129.19 -129.19 1dl5A.14.16 317 -129.18 -129.18 1a8o.14.12 70 -126.56 -126.56 4ts1A.15.17 319 -138.74 -138.74 2ts1.15.17 419 -138.03 -138.03 1eiwA.15.15 111 -136.46 -136.46 1i50J.15.16 70 -132.75 -132.75 1abrA.15.15 251 -131.04 -131.04 1dl5A.15.17 317 -129.91 -129.91 4ts1A.16.18 319 -147.37 -147.37 2ts1.16.18 419 -146.95 -146.95 1i50J.16.17 70 -142.34 -142.34 1eiwA.16.16 111 -140.79 -140.79 1abrA.16.16 251 -136.03 -136.03 1dl5A.16.18 317 -134.05 -134.05 4ts1A.17.19 319 -149.32 -149.32 2ts1.17.19 419 -149.01 -149.01 1i50J.17.18 70 -141.98 -141.98 1eiwA.17.17 111 -137.61 -137.61 1jbeA.17.17 128 -135.38 -135.38 3chy.17.17 128 -133.53 -133.53 4ts1A.18.20 319 -156.56 -156.56 2ts1.18.20 419 -156.40 -156.40 1i50J.18.19 70 -150.67 -150.67 1eiwA.18.18 111 -141.86 -141.86 1jbeA.18.18 128 -141.65 -141.65 3chy.18.18 128 -138.34 -138.34 4ts1A.19.21 319 -160.79 -160.79 2ts1.19.21 419 -160.51 -160.51 1i50J.19.20 70 -154.49 -154.49 1jbeA.19.19 128 -145.86 -145.86 1eiwA.19.19 111 -142.05 -142.05 3chy.19.19 128 -141.47 -141.47 4ts1A.20.22 319 -163.88 -163.88 2ts1.20.22 419 -163.31 -163.31 1i50J.20.21 70 -153.86 -153.86 1jbeA.20.20 128 -146.59 -146.59 3chy.20.20 128 -142.39 -142.39 1e6mA.20.20 128 -141.37 -141.37 4ts1A.21.23 319 -161.51 -161.51 2ts1.21.23 419 -160.76 -160.76 1i50J.21.22 70 -151.93 -151.93 1larA.21.21 575 -149.69 -149.69 1jbeA.21.21 128 -149.04 -149.04 3chy.21.21 128 -145.37 -145.37 4ts1A.22.24 319 -161.16 -161.16 2ts1.22.24 419 -160.20 -160.20 1jbeA.22.22 128 -151.02 -151.02 1larA.22.22 575 -150.65 -150.65 1i50J.22.23 70 -149.80 -149.80 3chy.22.22 128 -148.59 -148.59 4ts1A.23.25 319 -146.75 -146.75 2ts1.23.25 419 -145.37 -145.37 1larA.23.23 575 -145.01 -145.01 1hs7A.23.23 97 -143.63 -143.63 1i1gA.23.24 141 -141.81 -141.81 1i50J.23.24 70 -138.27 -138.27 1larA.24.24 575 -142.68 -142.68 1hs7A.24.24 97 -139.64 -139.64 1i1gA.24.25 141 -135.95 -135.95 1bea.24.26 127 -132.62 -132.62 4ts1A.24.26 319 -130.30 -130.30 1hwxA.24.27 501 -129.41 -129.41 1larA.25.25 575 -139.28 -139.28 1hs7A.25.25 97 -137.32 -137.32 1i1gA.25.26 141 -134.07 -134.07 1bea.25.27 127 -133.67 -133.67 1ytc.25.25 112 -130.25 -130.25 1hwxA.25.28 501 -127.75 -127.75 1larA.26.26 575 -140.16 -140.16 1hs7A.26.26 97 -139.57 -139.57 1bea.26.28 127 -138.51 -138.51 1i1gA.26.27 141 -132.29 -132.29 1ac0.26.26 108 -132.01 -132.01 1ytc.26.26 112 -129.59 -129.59 1bea.27.29 127 -145.89 -145.89 1larA.27.27 575 -144.82 -144.82 1ej0A.27.28 180 -143.34 -143.34 1hs7A.27.27 97 -142.95 -142.95 1ac0.27.27 108 -133.26 -133.26 1i1gA.27.28 141 -129.44 -129.44 1ej0A.28.29 180 -156.09 -156.09 1larA.28.28 575 -150.31 -150.31 1bea.28.30 127 -149.45 -149.45 1hs7A.28.28 97 -147.97 -147.97 1ac0.28.28 108 -140.80 -140.80 1qhhC.28.33 115 -139.06 -139.06 1ej0A.29.30 180 -162.76 -162.76 1hs7A.29.29 97 -148.09 -148.09 1bea.29.31 127 -147.84 -147.84 1larA.29.29 575 -146.82 -146.82 1ac0.29.29 108 -144.47 -144.47 1qhhC.29.34 115 -143.65 -143.65 1ej0A.30.31 180 -161.77 -161.77 1hs7A.30.30 97 -146.62 -146.62 1qhhC.30.35 115 -145.21 -145.21 1larA.30.30 575 -144.69 -144.69 1ac0.30.30 108 -143.03 -143.03 1bea.30.32 127 -142.13 -142.13 1ej0A.31.32 180 -161.63 -161.63 1qhhC.31.36 115 -149.33 -149.33 1hs7A.31.31 97 -146.38 -146.38 1ac0.31.31 108 -143.47 -143.47 1dzfA.31.35 215 -143.29 -143.29 1qo3C.31.31 137 -141.85 -141.85 1ej0A.32.33 180 -158.75 -158.75 1qhhC.32.37 115 -149.03 -149.03 1hs7A.32.32 97 -144.41 -144.41 1dzfA.32.36 215 -142.91 -142.91 1qo3C.32.32 137 -141.37 -141.37 1ac0.32.32 108 -140.79 -140.79 1ej0A.33.34 180 -155.17 -155.17 1qhhC.33.38 115 -150.39 -150.39 1dzfA.33.37 215 -142.48 -142.48 1hs7A.33.33 97 -142.45 -142.45 1dssG.33.34 333 -140.86 -140.86 1cf7B.33.33 95 -140.39 -140.39 1ej0A.34.35 180 -149.27 -149.27 1qhhC.34.39 115 -148.74 -148.74 1cf7B.34.34 95 -143.53 -143.53 1dssG.34.35 333 -141.92 -141.92 1dzfA.34.38 215 -141.21 -141.21 1hs7A.34.34 97 -138.39 -138.39 1qhhC.35.40 115 -147.97 -147.97 1ej0A.35.36 180 -145.68 -145.68 1cf7B.35.35 95 -142.34 -142.34 1dzfA.35.39 215 -141.21 -141.21 1dssG.35.36 333 -140.01 -140.01 1hs7A.35.35 97 -134.44 -134.44 1qhhC.36.41 115 -148.50 -148.50 1cf7B.36.36 95 -144.02 -144.02 1ej0A.36.37 180 -143.40 -143.40 1dssG.36.37 333 -142.25 -142.25 1dzfA.36.40 215 -140.86 -140.86 1hs7A.36.36 97 -134.38 -134.38 1qhhC.37.42 115 -148.19 -148.19 1dssG.37.38 333 -145.57 -145.57 1cf7B.37.37 95 -143.05 -143.05 1ej0A.37.38 180 -141.34 -141.34 1dzfA.37.41 215 -139.82 -139.82 1crwG.37.38 333 -136.61 -136.61 1qhhC.38.43 115 -149.23 -149.23 1dssG.38.39 333 -144.63 -144.63 1e8yA.38.43 966 -141.39 -141.39 1cf7B.38.38 95 -140.03 -140.03 1dzfA.38.42 215 -138.66 -138.66 1e8xA.38.44 961 -137.69 -137.69 1e8yA.39.44 966 -149.22 -149.22 1qhhC.39.44 115 -148.88 -148.88 1e8xA.39.45 961 -145.36 -145.36 1dssG.39.40 333 -143.11 -143.11 1e7uA.39.45 961 -139.99 -139.99 1cf7B.39.39 95 -138.35 -138.35 1e8yA.40.45 966 -150.87 -150.87 1e8xA.40.46 961 -146.51 -146.51 1qhhC.40.45 115 -142.34 -142.34 1e7uA.40.46 961 -141.19 -141.19 1dssG.40.41 333 -139.00 -139.00 1cf7B.40.40 95 -133.40 -133.40 1e8yA.41.46 966 -153.04 -153.04 1e8xA.41.47 961 -148.57 -148.57 1e7uA.41.47 961 -143.38 -143.38 1gt7A.41.48 274 -139.20 -139.20 1qhhC.41.46 115 -138.99 -138.99 1dssG.41.42 333 -137.50 -137.50 1e8yA.42.47 966 -153.82 -153.82 1e8xA.42.48 961 -149.32 -149.32 1e7uA.42.48 961 -144.36 -144.36 1gt7A.42.49 274 -142.37 -142.37 1ig6A.42.42 107 -140.76 -140.76 1d8bA.42.44 81 -136.84 -136.84 1e8yA.43.48 966 -149.37 -149.37 1e8xA.43.49 961 -144.55 -144.55 1ig6A.43.43 107 -142.50 -142.50 1gt7A.43.50 274 -141.31 -141.31 1e7uA.43.49 961 -140.04 -140.04 1d8bA.43.45 81 -139.93 -139.93 1e8yA.44.49 966 -145.47 -145.47 1ig6A.44.44 107 -144.26 -144.26 1e8xA.44.50 961 -140.97 -140.97 1gt7A.44.51 274 -140.86 -140.86 1bqz.44.49 77 -140.54 -140.54 1d8bA.44.46 81 -140.30 -140.30 1bqz.45.50 77 -144.40 -144.40 1ig6A.45.45 107 -143.32 -143.32 1d8bA.45.47 81 -142.01 -142.01 1qddA.45.45 144 -141.05 -141.05 1e8yA.45.50 966 -140.45 -140.45 1dgsA.45.48 667 -136.70 -136.70 1bqz.46.51 77 -144.66 -144.66 1d8bA.46.48 81 -141.24 -141.24 1qddA.46.46 144 -141.23 -141.23 1ig6A.46.46 107 -139.93 -139.93 1e8yA.46.51 966 -135.73 -135.73 1cf7B.46.46 95 -133.66 -133.66 1bqz.47.52 77 -146.73 -146.73 1qddA.47.47 144 -145.57 -145.57 1d8bA.47.49 81 -140.43 -140.43 1ig6A.47.47 107 -139.32 -139.32 1cf7B.47.47 95 -134.75 -134.75 1psrA.47.50 100 -133.38 -133.38 1qddA.48.48 144 -150.25 -150.25 1bqz.48.53 77 -147.27 -147.27 1d8bA.48.50 81 -137.69 -137.69 1ig6A.48.48 107 -136.34 -136.34 1cf7B.48.48 95 -135.57 -135.57 1psrA.48.51 100 -133.85 -133.85 1qddA.49.49 144 -155.60 -155.60 1bqz.49.54 77 -147.94 -147.94 1fdyA.49.51 297 -138.80 -138.80 1nal3.49.51 297 -138.33 -138.33 1nal1.49.51 297 -138.10 -138.10 1f2tB.49.55 148 -136.10 -136.10 1qddA.50.50 144 -160.93 -160.93 1bqz.50.55 77 -144.69 -144.69 1fdyA.50.52 297 -144.28 -144.28 1nal3.50.52 297 -143.90 -143.90 1nal1.50.52 297 -143.66 -143.66 1f74A.50.52 293 -141.64 -141.64 1qddA.51.51 144 -162.73 -162.73 1hdj.51.54 77 -145.52 -145.52 1fdyA.51.53 297 -143.48 -143.48 1nal3.51.53 297 -143.11 -143.11 1f74A.51.53 293 -142.96 -142.96 1nal1.51.53 297 -142.82 -142.82 1qddA.52.52 144 -161.86 -161.86 1hdj.52.55 77 -152.97 -152.97 1pou.52.54 71 -145.57 -145.57 1f74A.52.54 293 -141.16 -141.16 1fdyA.52.54 297 -139.99 -139.99 1nal3.52.54 297 -139.61 -139.61 1qddA.53.53 144 -163.72 -163.72 1hdj.53.56 77 -156.07 -156.07 1pou.53.55 71 -148.97 -148.97 1co6A.53.55 107 -143.24 -143.24 1f3mC.53.57 297 -139.08 -139.08 1f74A.53.55 293 -138.36 -138.36 1qddA.54.54 144 -162.91 -162.91 1hdj.54.57 77 -157.23 -157.23 1pou.54.56 71 -152.05 -152.05 1co6A.54.56 107 -148.22 -148.22 1f3mC.54.58 297 -138.08 -138.08 1ig6A.54.54 107 -137.21 -137.21 1qddA.55.55 144 -163.58 -163.58 1pou.55.57 71 -155.90 -155.90 1hdj.55.58 77 -155.80 -155.80 1co6A.55.57 107 -155.17 -155.17 1ile.55.61 821 -144.26 -144.26 1c75A.55.57 71 -140.91 -140.91 1qddA.56.56 144 -162.85 -162.85 1pou.56.58 71 -160.94 -160.94 1co6A.56.58 107 -158.08 -158.08 1hdj.56.59 77 -152.12 -152.12 1ile.56.62 821 -147.03 -147.03 1c75A.56.58 71 -144.53 -144.53 1pou.57.59 71 -163.94 -163.94 1qddA.57.57 144 -162.76 -162.76 1co6A.57.59 107 -160.05 -160.05 1ile.57.63 821 -149.49 -149.49 1c75A.57.59 71 -147.09 -147.09 1hdj.57.60 77 -144.12 -144.12 1pou.58.60 71 -163.53 -163.53 1co6A.58.60 107 -157.06 -157.06 1qddA.58.58 144 -156.13 -156.13 1c75A.58.60 71 -147.32 -147.32 1ile.58.64 821 -146.06 -146.06 1vfyA.58.61 73 -144.31 -144.31 1pou.59.61 71 -163.75 -163.75 1co6A.59.61 107 -156.79 -156.79 1c75A.59.61 71 -153.11 -153.11 1qddA.59.59 144 -152.16 -152.16 1vfyA.59.62 73 -144.09 -144.09 1au7A.59.61 146 -143.04 -143.04 1pou.60.62 71 -165.61 -165.61 1c75A.60.62 71 -154.94 -154.94 1co6A.60.62 107 -151.15 -151.15 1qddA.60.60 144 -145.29 -145.29 1bax.60.62 94 -144.77 -144.77 1vfyA.60.63 73 -143.93 -143.93