PFRMAT SS
TARGET T0170
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0170.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 30
METHOD
MODEL 1
Q H 0.339
P H 0.480
A H 0.656
K H 0.749
K H 0.789
T H 0.771
Y H 0.676
T H 0.542
W H 0.422
N H 0.462
T H 0.700
K H 0.901
E H 0.914
E H 0.897
A H 0.885
K H 0.863
Q H 0.861
A H 0.874
F H 0.799
K H 0.879
E H 0.910
L H 0.786
L H 0.714
K H 0.596
E H 0.552
K B 0.576
R S 0.596
V B 0.510
P B 0.466
S I 0.365
N S 0.754
A B 0.380
S B 0.499
W H 0.693
E H 0.901
Q H 0.900
A H 0.831
M H 0.785
K H 0.831
M H 0.700
I H 0.469
I H 0.562
N S 0.772
D E 0.401
P H 0.645
R H 0.554
Y H 0.251
S H 0.391
A H 0.296
L H 0.317
A H 0.215
N B 0.288
L H 0.391
S H 0.671
E H 0.683
K H 0.845
K H 0.884
Q H 0.893
A H 0.890
F H 0.886
N H 0.909
A H 0.918
Y H 0.897
K H 0.847
V H 0.810
Q H 0.692
T H 0.411
E H 0.335
K H 0.292
END