# List of top-scoring protein chains for t2k-100-30-dssp_ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1b2vA 188 3.02e-02 1b2vA d.35.1.1 38532 1dk0A 188 3.02e-02 1b2vA d.35.1.1 38530 1uaaA 673 2.97e-01 1pjr c.37.1.13 32401 c.37.1.13 32402 1g59A 468 4.86e-01 a.97.1.1 60257 c.26.1.1 60258 2ucz 165 8.73e-01 1u9aA d.20.1.1 38330 1ars 396 1.37e+00 1ajsA c.67.1.1 34287 1spa 396 1.42e+00 1ajsA c.67.1.1 34291 1gln 468 1.47e+00 1gln a.97.1.1 18752 c.26.1.1 31588 1qisA 396 1.53e+00 1ajsA c.67.1.1 34284 1art 396 1.60e+00 1ajsA c.67.1.1 34285 1ahxA 396 1.78e+00 1ajsA c.67.1.1 34293 1anxA 319 2.19e+00 1avc a.65.1.1 18161 1igd 61 2.42e+00 2igd d.15.7.1 37822 2igd 61 2.42e+00 2igd d.15.7.1 37821 1ka3A 90 2.75e+00 2tct 207 3.00e+00 2tct a.4.1.9 16063 a.121.1.1 19240 2shpA 525 3.15e+00 2shpA c.45.1.2 32683 d.93.1.1 40533 d.93.1.1 40534 2baa 243 3.16e+00 1cnsA d.2.1.1 36243 1fyhA 258 3.18e+00 1d9cA a.26.1.3 16907 a.26.1.3 16908 2aat 396 3.44e+00 1ajsA c.67.1.1 34348 1g0cA 364 3.54e+00 7a3hA c.1.8.3 60165 1i7kA 179 3.60e+00 1u9aA d.20.1.1 61889 1jr5A 90 4.29e+00 a.150.1.1 67113 1dxjA 242 4.59e+00 1cnsA d.2.1.1 36244 1avc 673 5.23e+00 1avc a.65.1.1 18178 a.65.1.1 18179 1j7lA 264 5.28e+00 d.144.1.6 62697 1qh4A 380 5.72e+00 1qh4A a.83.1.1 18462 d.128.1.2 41197 1hvd 319 5.89e+00 1avc a.65.1.1 18154 1skyE 473 5.95e+00 1skyE a.69.1.1 18314 b.49.1.1 26479 c.37.1.11 32359 1qhhA 167 5.98e+00 1pjr c.37.1.13 32393 1dmhA 311 6.05e+00 1dmhA b.3.6.1 22633 1pd21 199 6.43e+00 1pd21 1ecl 597 6.63e+00 1ecl e.10.1.1 43238 1kzhA 555 6.95e+00 1a8b 318 7.46e+00 1avc a.65.1.1 18171 2ran 316 7.47e+00 1avc a.65.1.1 18170 2mjpA 193 7.55e+00 1b78A c.51.4.1 33223 1qntA 176 7.64e+00 1sfe a.4.2.1 16074 c.55.7.1 33749 1agrH 205 7.65e+00 1agrE a.91.1.1 18539 1eh8A 207 7.67e+00 1sfe a.4.2.1 16077 c.55.7.1 33752 1j7iA 264 7.90e+00 1j7iA d.144.1.6 62694 1b78A 193 7.96e+00 1b78A c.51.4.1 33221 1u9aA 160 8.08e+00 1u9aA d.20.1.1 38333 1dguA 183 8.62e+00 1dguA a.39.1.5 17333 1l5wA 796 9.42e+00 1eh7A 207 9.54e+00 1sfe a.4.2.1 16075 c.55.7.1 33750 1gwcA 230 9.67e+00 3pte 349 9.83e+00 3pte e.3.1.1 42687 1jqlB 140 1.01e+01 c.37.1.13 63234 1ltzA 297 1.02e+01 1hvbA 349 1.03e+01 3pte e.3.1.1 42686 1g8oA 310 1.04e+01 1g8oA c.68.1.9 60375 1jyhA 157 1.08e+01 1bjnA 360 1.09e+01 1bjnA c.67.1.4 34469 1ofgA 381 1.15e+01 1ofgA c.2.1.3 30064 d.81.1.5 39979 1it2A 146 1.16e+01 a.1.1.2 66365 1bjoA 360 1.24e+01 1bjnA c.67.1.4 34471 1bea 127 1.26e+01 1bea a.52.1.2 17826 1amuA 563 1.29e+01 1amuA e.23.1.1 43351 1bkjA 240 1.30e+01 1bkjA d.90.1.1 40243 1jrjA 39 1.34e+01 j.6.1.1 67135 1h6dA 433 1.38e+01 c.2.1.3 65656 d.81.1.5 65657 1gefA 123 1.51e+01 1gefA c.52.1.18 60465 1jm7B 117 1.52e+01 g.44.1.1 66881 2occC 261 1.63e+01 1ocrC f.2.1.3 43520 1maz 221 1.66e+01 1maz f.1.4.1 43393 1ahpA 797 1.66e+01 1a8i c.87.1.4 35544 1cnsA 243 1.69e+01 1cnsA d.2.1.1 36241 1af3 196 1.69e+01 1maz f.1.4.1 43397 1gkuB 1054 1.70e+01 c.37.1.16 65257 c.37.1.16 65258 e.10.1.1 65259 1aihA 170 1.84e+01 1aihA d.163.1.1 42149 1t7pA 698 1.85e+01 1t7pA c.55.3.5 33712 e.8.1.1 43005 3crxA 343 1.90e+01 4crxA a.60.9.1 18101 d.163.1.1 42161 1k4vA 289 1.91e+01 1jj2Q 154 1.95e+01 1ffkO d.55.1.1 63102 1phr 157 1.99e+01 1dg9A c.44.1.1 32635 1ffkO 154 2.03e+01 1ffkO d.55.1.1 38899 1ci4A 89 2.04e+01 1qckA a.60.5.1 17970 1vls 146 2.05e+01 1vls a.24.2.1 16532 1dg9A 157 2.14e+01 1dg9A c.44.1.1 32637 1jg1A 235 2.18e+01 c.66.1.7 66661 1iqcA 308 2.21e+01 a.3.1.5 66266 a.3.1.5 66267 1aoy 78 2.26e+01 1aoy a.4.5.3 16087 1yagA 375 2.27e+01 1yagA c.55.1.1 33449 c.55.1.1 33450 1jwhA 337 2.27e+01 1gw5S 142 2.32e+01 1is8A 230 2.44e+01 d.96.1.1 66321 1hi0P 664 2.45e+01 1hi0P e.8.1.6 61051 2ligA 164 2.52e+01 1vls a.24.2.1 16530 1agrE 205 2.52e+01 1agrE a.91.1.1 18538 1g4yR 148 2.58e+01 1cll a.39.1.5 60252 1qqfA 277 2.58e+01 1c3d a.102.4.4 18875 1eokA 290 2.58e+01 1eokA c.1.8.5 28991 1bvwA 360 2.64e+01 1bvwA c.6.1.1 30668 1c8kA 842 2.68e+01 1a8i c.87.1.4 35491 1l6xB 34 2.68e+01 1a1z 91 2.72e+01 1a1z a.77.1.1 18427 1ponB 36 2.80e+01 1ponB 1dofA 403 2.85e+01 1c3cA a.127.1.1 19429 1cuk 203 2.87e+01 1hjp a.5.1.1 16273 a.60.2.1 17946 b.40.4.2 25265 1kv8A 216 2.88e+01 1h5uA 842 2.92e+01 1a8i c.87.1.4 60655 1fiqC 763 2.92e+01 1fiqC d.41.1.1 38588 d.133.1.1 41418 2bvwA 362 2.97e+01 1bvwA c.6.1.1 30666 1a8i 842 3.03e+01 1a8i c.87.1.4 35490 1jraA 117 3.05e+01 a.24.15.1 67117 1omp 370 3.12e+01 4mbp c.94.1.1 35778 1hhsA 664 3.21e+01 1hi0P e.8.1.6 61045 1k3kA 158 3.23e+01 1jnyA 435 3.29e+01 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1bal 51 3.33e+01 1bbl a.9.1.1 16357 1pbn 289 3.35e+01 1b8oA c.56.2.1 33771 1hekA 131 3.51e+01 a.61.1.5 65818 1mpb 370 3.63e+01 4mbp c.94.1.1 35780 1ocrC 261 3.63e+01 1ocrC f.2.1.3 43540 1b1cA 181 3.69e+01 1amoA c.23.5.2 31212 1l5aA 436 3.75e+01 1jr8A 117 3.77e+01 a.24.15.1 67115 1qckA 89 3.79e+01 1qckA a.60.5.1 17976 2ezxA 89 3.79e+01 1qckA a.60.5.1 17978 1aj8A 371 3.94e+01 1aj8A a.103.1.1 18900 3erk 364 3.97e+01 1hcl d.144.1.1 41654 1knzA 164 3.97e+01 e.34.1.1 68709 1gw9A 388 3.99e+01