// CB constraints to get the last part of the sequence in right alignment
// trying to connect herpin 125-131 137-142 to R103-108 (in parallel)

Constraint 844	1015	3 5.12 7	// CBs  R103 D125
Constraint 855	1023	3 5.12 7	// CBs	V104 I126
Constraint 862	1031	3 5.12 7	// CBs  K105 E127
Constraint 871	1040	3 5.12 7	// CBs  C106 K128
Constraint 876	1048	3 5.12 7	// CAs  V107 G129
Constraint 884	1053	3 5.12 7	// CBs  T108 T130

// hairpin constraints

Constraint 1060	1103	3 5.12 7	// CBs  K131 S137
Constraint 1053	1109	3 5.12 7	// CBs  T130 V138
Constraint 1048 1115	3 5.12 7	// CAs  G129 F139
Constraint 1040 1127	3 5.12 7	// CBs  K128 A140