SetSeed InfilePrefix Include define-score.script Time MakeGenericFragmentLibrary Time // The following alignments are believed to be good: InFilePrefix decoys/ OutFilePrefix decoys/ ClearConform ReadConformPDB T0169.try21-opt.pdb ReadConformPDB T0169.try6-opt.pdb ReadConformPDB T0169.try20-opt.pdb ReadConformPDB T0169.try9-opt.pdb ReadConformPDB T0169.try7-opt.pdb ReadConformPDB T0169.try5-opt.pdb ReadConformPDB T0169.try8-opt.pdb PrintAllConformPDB T0169.nocons.super superpose ClearConform ReadConformPDB T0169.try21-opt.pdb ReadConformPDB T0169.try20-opt.pdb ReadConformPDB T0169.try7-opt.pdb ReadConformPDB T0169.try9-opt.pdb ReadConformPDB T0169.try12-opt.pdb ReadConformPDB T0169.try8-opt.pdb PrintAllConformPDB T0169.try18.super superpose ClearConform ReadConformPDB T0169.try17-opt.pdb ReadConformPDB T0169.try15-opt.pdb ReadConformPDB T0169.try16-opt.pdb ReadConformPDB T0169.try13-opt.pdb ReadConformPDB T0169.try14-opt.pdb ReadConformPDB T0169.try7-opt.pdb ReadConformPDB T0169.try4-opt.pdb ReadConformPDB T0169.try9-opt.pdb PrintAllConformPDB T0169.try17.super superpose ClearConform ReadConformPDB T0169.try16-opt.pdb ReadConformPDB T0169.try17-opt.pdb ReadConformPDB T0169.try15-opt.pdb ReadConformPDB T0169.try14-opt.pdb ReadConformPDB T0169.try13-opt.pdb ReadConformPDB T0169.try4-opt.pdb ReadConformPDB T0169.try7-opt.pdb ReadConformPDB T0169.try6-opt.pdb ReadConformPDB T0169.try5-opt.pdb PrintAllConformPDB T0169.try16.super superpose ClearConform ReadConformPDB T0169.try17-opt.pdb ReadConformPDB T0169.try15-opt.pdb ReadConformPDB T0169.try16-opt.pdb ReadConformPDB T0169.try14-opt.pdb ReadConformPDB T0169.try13-opt.pdb ReadConformPDB T0169.try7-opt.pdb ReadConformPDB T0169.try4-opt.pdb ReadConformPDB T0169.try11-opt.pdb ReadConformPDB T0169.try12-opt.pdb PrintAllConformPDB T0169.try15.super superpose ClearConform ReadConformPDB T0169.try14-opt.pdb ReadConformPDB T0169.try13-opt.pdb ReadConformPDB T0169.try15-opt.pdb ReadConformPDB T0169.try16-opt.pdb ReadConformPDB T0169.try17-opt.pdb ReadConformPDB T0169.try12-opt.pdb ReadConformPDB T0169.try10-opt.pdb ReadConformPDB T0169.try11-opt.pdb ReadConformPDB T0169.try8-opt.pdb PrintAllConformPDB T0169.try14.super superpose ClearConform ReadConformPDB T0169.try14-opt.pdb ReadConformPDB T0169.try13-opt.pdb ReadConformPDB T0169.try15-opt.pdb ReadConformPDB T0169.try16-opt.pdb ReadConformPDB T0169.try17-opt.pdb ReadConformPDB T0169.try12-opt.pdb ReadConformPDB T0169.try10-opt.pdb ReadConformPDB T0169.try11-opt.pdb ReadConformPDB T0169.try8-opt.pdb PrintAllConformPDB T0169.try13.super superpose ClearConform ReadConformPDB T0169.try12-opt.pdb ReadConformPDB T0169.try10-opt.pdb ReadConformPDB T0169.try11-opt.pdb ReadConformPDB T0169.try8-opt.pdb ReadConformPDB T0169.try9-opt.pdb ReadConformPDB T0169.try13-opt.pdb ReadConformPDB T0169.try14-opt.pdb PrintAllConformPDB T0169.try12.super superpose ClearConform ReadConformPDB T0169.try11-opt.pdb ReadConformPDB T0169.try10-opt.pdb ReadConformPDB T0169.try12-opt.pdb ReadConformPDB T0169.try8-opt.pdb ReadConformPDB T0169.try9-opt.pdb ReadConformPDB T0169.try17-opt.pdb ReadConformPDB T0169.try15-opt.pdb PrintAllConformPDB T0169.try11.super superpose ClearConform ReadConformPDB T0169.try10-opt.pdb ReadConformPDB T0169.try11-opt.pdb ReadConformPDB T0169.try9-opt.pdb ReadConformPDB T0169.try8-opt.pdb ReadConformPDB T0169.try12-opt.pdb ReadConformPDB T0169.try17-opt.pdb ReadConformPDB T0169.try15-opt.pdb PrintAllConformPDB T0169.try10.super superpose ClearConform ReadConformPDB T0169.try9-opt.pdb ReadConformPDB T0169.try10-opt.pdb ReadConformPDB T0169.try8-opt.pdb ReadConformPDB T0169.try21-opt.pdb ReadConformPDB T0169.try20-opt.pdb ReadConformPDB T0169.try11-opt.pdb ReadConformPDB T0169.try12-opt.pdb ReadConformPDB T0169.try17-opt.pdb PrintAllConformPDB T0169.try9.super superpose ClearConform ReadConformPDB T0169.try9-opt.pdb ReadConformPDB T0169.try10-opt.pdb ReadConformPDB T0169.try8-opt.pdb ReadConformPDB T0169.try11-opt.pdb ReadConformPDB T0169.try16-opt.pdb ReadConformPDB T0169.try17-opt.pdb ReadConformPDB T0169.try15-opt.pdb PrintAllConformPDB T0169.try8.super superpose ClearConform ReadConformPDB T0169.try9-opt.pdb ReadConformPDB T0169.try21-opt.pdb ReadConformPDB T0169.try8-opt.pdb ReadConformPDB T0169.try20-opt.pdb ReadConformPDB T0169.try11-opt.pdb ReadConformPDB T0169.try12-opt.pdb ReadConformPDB T0169.try7-opt.pdb PrintAllConformPDB T0169.try6.super superpose ClearConform ReadConformPDB T0169.try11-opt.pdb ReadConformPDB T0169.try10-opt.pdb ReadConformPDB T0169.try17-opt.pdb ReadConformPDB T0169.try16-opt.pdb ReadConformPDB T0169.try9-opt.pdb ReadConformPDB T0169.try17-opt.pdb ReadConformPDB T0169.try15-opt.pdb PrintAllConformPDB T0169.try3.super superpose ClearConform ReadConformPDB T0169.try9-opt.pdb ReadConformPDB T0169.try11-opt.pdb ReadConformPDB T0169.try8-opt.pdb ReadConformPDB T0169.try20-opt.pdb ReadConformPDB T0169.try11-opt.pdb ReadConformPDB T0169.try12-opt.pdb ReadConformPDB T0169.try10-opt.pdb PrintAllConformPDB T0169.try2.super superpose ClearConform quit