PFRMAT SS TARGET T0169 AUTHOR 4069-6308-1312 METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 7 (1 EBGHSTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0169.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 246 METHOD MODEL 1 M C 0.971 D E 0.568 I E 0.518 R E 0.466 T C 0.500 I C 0.786 T C 0.914 S H 0.437 S H 0.460 D H 0.680 Y H 0.956 E H 0.950 M H 0.952 V H 0.975 T H 0.979 S H 0.966 V H 0.954 L H 0.937 N H 0.814 E H 0.658 W H 0.423 W C 0.519 G C 0.460 G C 0.317 R C 0.317 Q H 0.420 L H 0.496 K H 0.662 E H 0.851 K H 0.894 L H 0.932 P H 0.956 R H 0.960 L H 0.956 F H 0.933 F H 0.852 E H 0.650 H H 0.281 F C 0.362 Q T 0.523 D T 0.357 T E 0.368 S E 0.856 F E 0.976 I E 0.984 T E 0.967 S E 0.907 E E 0.635 H T 0.898 N T 0.850 S E 0.773 M E 0.936 T E 0.982 G E 0.989 F E 0.987 L E 0.992 I E 0.988 G E 0.947 F E 0.863 Q E 0.603 S C 0.275 Q T 0.341 S T 0.338 D C 0.353 P C 0.294 E C 0.284 T E 0.663 A E 0.860 Y E 0.936 I E 0.960 H E 0.915 F E 0.921 S E 0.932 G E 0.940 V E 0.842 H C 0.600 P G 0.465 D G 0.517 F G 0.683 R T 0.319 K T 0.620 M S 0.329 Q C 0.342 I H 0.460 G H 0.824 K H 0.980 Q H 0.992 L H 0.993 Y H 0.996 D H 0.995 V H 0.995 F H 0.997 I H 0.996 E H 0.993 T H 0.991 V H 0.990 K H 0.975 Q H 0.818 R T 0.909 G T 0.978 C C 0.880 T E 0.493 R E 0.932 V E 0.979 K E 0.990 C E 0.976 V E 0.884 T E 0.527 S C 0.653 P T 0.317 V C 0.313 N C 0.552 K H 0.793 V H 0.904 S H 0.973 I H 0.994 A H 0.997 Y H 0.997 H H 0.996 T H 0.987 K H 0.927 L T 0.581 G T 0.882 F C 0.843 D E 0.573 I E 0.715 E E 0.752 K E 0.809 G E 0.849 T E 0.829 K E 0.705 T E 0.470 V T 0.312 N T 0.317 G S 0.383 I E 0.358 S E 0.607 V E 0.702 F E 0.689 A E 0.608 N E 0.477 Y C 0.298 D C 0.322 G C 0.355 P C 0.372 G C 0.257 Q H 0.364 D H 0.429 R H 0.579 V H 0.522 L H 0.539 F H 0.442 V H 0.401 K H 0.262 N C 0.607 I C 0.999 END