PFRMAT SS
TARGET T0169
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0169.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 246
METHOD
MODEL 1
M E 0.576
D E 0.635
I E 0.431
R B 0.395
T E 0.313
I B 0.387
T B 0.661
S I 0.551
S H 0.614
D S 0.500
Y H 0.721
E H 0.909
M H 0.898
V H 0.930
T H 0.946
S H 0.941
V H 0.903
L H 0.808
N H 0.698
E H 0.472
W H 0.227
W B 0.210
G H 0.215
G H 0.201
R H 0.204
Q H 0.310
L H 0.349
K H 0.539
E H 0.794
K H 0.864
L H 0.884
P H 0.886
R H 0.884
L H 0.811
F H 0.701
F H 0.640
E H 0.344
H S 0.205
F H 0.207
Q H 0.234
D S 0.228
T E 0.444
S E 0.644
F E 0.569
I E 0.593
T E 0.626
S C 0.267
E H 0.270
H D 0.432
N S 0.813
S B 0.667
M A 0.641
T F 0.279
G E 0.527
F E 0.551
L E 0.523
I E 0.472
G E 0.327
F E 0.282
Q B 0.203
S E 0.164
Q H 0.147
S H 0.132
D E 0.145
P H 0.166
E S 0.177
T E 0.281
A E 0.385
Y E 0.527
I A 0.631
H E 0.291
F E 0.494
S E 0.453
G E 0.467
V B 0.471
H B 0.505
P I 0.577
D H 0.658
F H 0.455
R H 0.542
K S 0.293
M B 0.368
Q H 0.301
I H 0.711
G H 0.905
K H 0.942
Q H 0.954
L H 0.950
Y H 0.945
D H 0.950
V H 0.970
F H 0.927
I H 0.939
E H 0.951
T H 0.917
V H 0.900
K H 0.767
Q H 0.679
R B 0.618
G S 0.482
C E 0.415
T E 0.233
R A 0.466
V E 0.661
K E 0.624
C E 0.478
V E 0.426
T E 0.332
S B 0.346
P H 0.308
V H 0.368
N H 0.344
K H 0.709
V H 0.902
S H 0.889
I H 0.926
A H 0.959
Y H 0.960
H H 0.935
T H 0.835
K H 0.834
L B 0.513
G T 0.341
F E 0.391
D B 0.497
I A 0.599
E F 0.166
K E 0.281
G E 0.297
T E 0.362
K E 0.182
T E 0.235
V E 0.174
N S 0.154
G C 0.181
I E 0.236
S E 0.371
V E 0.363
F E 0.305
A E 0.268
N E 0.245
Y H 0.177
D B 0.137
G D 0.238
P H 0.155
G S 0.270
Q B 0.255
D H 0.213
R H 0.354
V H 0.296
L H 0.323
F H 0.287
V E 0.206
K B 0.232
N E 0.215
I E 0.164
END