PFRMAT SS TARGET T0168 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 6 (1 EBGHTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0168.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 36 METHOD MODEL 1 M C 0.564 K H 0.747 E H 0.744 L H 0.743 I H 0.599 K H 0.500 E H 0.489 H C 0.387 Q C 0.360 K C 0.424 D C 0.454 I H 0.465 N H 0.509 P H 0.541 A H 0.721 L H 0.801 Q H 0.774 L H 0.919 H H 0.964 D H 0.972 W H 0.975 V H 0.965 E H 0.960 Y H 0.904 Y H 0.789 R H 0.518 P H 0.453 F H 0.359 A T 0.504 A T 0.587 N T 0.554 G T 0.428 Q C 0.467 S C 0.432 A H 0.337 N H 0.408 Y H 0.593 I H 0.600 P H 0.706 A H 0.757 L H 0.772 G H 0.700 K H 0.414 V C 0.490 N T 0.646 D T 0.783 S T 0.781 Q T 0.607 L E 0.563 G E 0.768 I E 0.920 C E 0.964 V E 0.976 L E 0.970 E E 0.728 P T 0.813 D T 0.957 G T 0.858 T E 0.790 M E 0.942 I E 0.883 H E 0.892 A E 0.603 G E 0.400 D T 0.598 W T 0.574 N T 0.563 V T 0.466 S C 0.464 F E 0.468 T E 0.630 M E 0.542 Q T 0.351 S T 0.324 I T 0.356 S C 0.390 K H 0.407 V H 0.957 I H 0.989 S H 0.995 F H 0.998 I H 0.998 A H 0.996 A H 0.991 C H 0.969 M H 0.922 S H 0.851 R H 0.675 G C 0.636 I H 0.742 P H 0.821 Y H 0.880 V H 0.889 L H 0.853 D H 0.886 R H 0.775 V C 0.463 D C 0.660 V C 0.444 E C 0.388 P C 0.458 T C 0.487 G C 0.468 D T 0.425 A T 0.360 F H 0.394 N H 0.505 S H 0.559 I H 0.626 I H 0.578 R H 0.597 L H 0.536 E H 0.458 I H 0.326 N T 0.468 K T 0.868 P T 0.914 G T 0.893 K T 0.740 P T 0.473 F T 0.505 N T 0.506 P C 0.609 M E 0.352 I E 0.544 N E 0.616 A E 0.674 G E 0.875 A E 0.970 L E 0.978 T E 0.969 I E 0.927 A E 0.601 S E 0.352 I T 0.278 L T 0.791 P T 0.903 G T 0.904 E T 0.759 S C 0.711 A H 0.764 Y H 0.844 E H 0.885 K H 0.936 L H 0.979 E H 0.978 F H 0.985 L H 0.993 Y H 0.995 S H 0.994 V H 0.997 M H 0.997 E H 0.991 T H 0.972 L H 0.890 I H 0.459 G T 0.518 K T 0.520 R C 0.505 P E 0.392 R C 0.478 I C 0.533 H C 0.658 E H 0.882 E H 0.900 V H 0.869 F H 0.817 R H 0.800 S H 0.694 E H 0.721 W H 0.635 E H 0.565 T H 0.550 A C 0.375 H H 0.629 R H 0.951 N H 0.990 R H 0.995 A H 0.999 L H 1.000 A H 1.000 Y H 0.999 Y H 0.997 L H 0.992 K H 0.980 E H 0.959 T H 0.848 N C 0.745 F C 0.650 L T 0.482 E T 0.609 A T 0.463 E C 0.589 V H 0.961 E H 0.967 E H 0.965 T H 0.980 L H 0.984 E H 0.980 V H 0.981 Y H 0.984 L H 0.970 K H 0.990 Q H 0.992 C H 0.990 A H 0.986 M H 0.984 E H 0.985 S H 0.961 T H 0.884 T H 0.983 E H 0.995 D H 0.992 I H 0.999 A H 0.999 L H 0.999 I H 0.999 G H 0.999 L H 0.998 I H 0.995 L H 0.991 A H 0.949 H H 0.887 D H 0.415 G C 0.666 Y C 0.612 H C 0.467 P T 0.667 I T 0.703 R T 0.778 H T 0.716 E C 0.343 Q E 0.462 V C 0.447 I C 0.629 P C 0.807 K H 0.878 D H 0.912 V H 0.946 A H 0.980 K H 0.989 L H 0.988 A H 0.995 K H 0.995 A H 0.992 L H 0.984 M H 0.964 L H 0.943 T H 0.933 C H 0.907 G H 0.577 M H 0.702 Y H 0.658 N H 0.625 A H 0.708 S H 0.614 G H 0.559 K H 0.598 Y H 0.541 A H 0.559 A H 0.444 F H 0.396 V C 0.316 G C 0.707 V C 0.675 P C 0.642 A C 0.411 K T 0.552 S T 0.704 G T 0.655 V T 0.420 S C 0.553 G C 0.505 G E 0.932 I E 0.983 M E 0.983 A E 0.968 L E 0.962 V E 0.849 P C 0.619 P T 0.511 S T 0.469 A T 0.399 R T 0.388 R T 0.413 E T 0.401 Q T 0.437 P T 0.491 F T 0.484 Q T 0.475 S T 0.375 G E 0.416 C E 0.683 G E 0.906 I E 0.967 G E 0.962 I E 0.937 Y E 0.747 G C 0.540 P C 0.609 A C 0.515 I C 0.480 D T 0.596 E T 0.657 Y T 0.553 G T 0.503 N H 0.819 S H 0.918 L H 0.931 T H 0.949 G H 0.974 G H 0.998 M H 0.998 L H 0.998 L H 0.999 K H 0.998 H H 0.998 M H 0.997 A H 0.987 Q H 0.966 E H 0.940 W H 0.846 E C 0.845 L C 0.761 S C 0.678 I C 0.741 F C 0.985 END