PFRMAT SS TARGET T0168 AUTHOR 4069-6308-1312 METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 7 (1 EBGHSTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0168.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 36 METHOD MODEL 1 M C 0.869 K H 0.578 E H 0.510 L H 0.491 I H 0.520 K H 0.505 E H 0.409 H H 0.294 Q C 0.392 K C 0.404 D C 0.381 I H 0.327 N H 0.377 P H 0.389 A H 0.643 L H 0.751 Q H 0.819 L H 0.921 H H 0.968 D H 0.972 W H 0.974 V H 0.966 E H 0.923 Y H 0.855 Y H 0.793 R H 0.615 P H 0.514 F H 0.438 A H 0.314 A T 0.383 N T 0.605 G S 0.335 Q C 0.617 S C 0.499 A C 0.380 N G 0.310 Y G 0.253 I C 0.432 P H 0.348 A G 0.442 L G 0.688 G G 0.561 K G 0.338 V C 0.469 N C 0.840 D T 0.739 S T 0.762 Q T 0.231 L E 0.602 G E 0.915 I E 0.974 C E 0.989 V E 0.984 L E 0.960 E E 0.691 P E 0.445 D T 0.906 G T 0.595 T E 0.587 M E 0.915 I E 0.940 H E 0.890 A E 0.550 G T 0.383 D C 0.384 W T 0.480 N T 0.352 V S 0.644 S C 0.487 F E 0.733 T E 0.833 M E 0.708 Q E 0.586 S E 0.444 I E 0.345 S H 0.446 K H 0.541 V H 0.889 I H 0.975 S H 0.988 F H 0.990 I H 0.993 A H 0.991 A H 0.980 C H 0.948 M H 0.898 S H 0.799 R H 0.684 G H 0.484 I H 0.871 P H 0.949 Y H 0.957 V H 0.964 L H 0.954 D H 0.949 R H 0.925 V H 0.722 D C 0.367 V C 0.549 E C 0.677 P C 0.666 T C 0.407 G S 0.739 D C 0.512 A C 0.303 F H 0.295 N H 0.301 S H 0.366 I H 0.360 I E 0.380 R E 0.427 L E 0.418 E E 0.388 I E 0.301 N C 0.349 K T 0.348 P T 0.674 G T 0.531 K C 0.587 P C 0.725 F C 0.659 N C 0.720 P H 0.283 M H 0.377 I H 0.531 N H 0.684 A H 0.816 G H 0.769 A H 0.831 L H 0.818 T H 0.846 I H 0.733 A H 0.529 S H 0.450 I H 0.386 L C 0.364 P T 0.671 G T 0.694 E C 0.589 S C 0.790 A H 0.810 Y H 0.878 E H 0.926 K H 0.970 L H 0.980 E H 0.985 F H 0.989 L H 0.995 Y H 0.996 S H 0.995 V H 0.995 M H 0.994 E H 0.980 T H 0.953 L H 0.921 I H 0.559 G T 0.363 K S 0.437 R C 0.415 P C 0.479 R C 0.487 I C 0.340 H C 0.735 E H 0.830 E H 0.877 V H 0.863 F H 0.853 R H 0.690 S H 0.613 E H 0.515 W H 0.446 E H 0.444 T H 0.471 A H 0.627 H H 0.773 R H 0.945 N H 0.974 R H 0.986 A H 0.989 L H 0.996 A H 0.997 Y H 0.997 Y H 0.996 L H 0.993 K H 0.980 E H 0.883 T T 0.737 N T 0.710 F C 0.820 L C 0.673 E C 0.616 A S 0.525 E C 0.320 V H 0.966 E H 0.991 E H 0.993 T H 0.996 L H 0.995 E H 0.993 V H 0.989 Y H 0.972 L H 0.920 K H 0.870 Q H 0.846 C H 0.832 A H 0.791 M H 0.833 E H 0.797 S H 0.654 T H 0.461 T H 0.888 E H 0.941 D H 0.970 I H 0.984 A H 0.986 L H 0.975 I H 0.970 G H 0.966 L H 0.958 I H 0.922 L H 0.850 A H 0.706 H T 0.678 D T 0.908 G C 0.435 Y C 0.591 H C 0.645 P C 0.528 I T 0.462 R T 0.415 H T 0.378 E C 0.507 Q E 0.480 V C 0.454 I C 0.456 P C 0.861 K H 0.686 D H 0.797 V H 0.928 A H 0.979 K H 0.977 L H 0.984 A H 0.986 K H 0.983 A H 0.972 L H 0.972 M H 0.937 L H 0.907 T H 0.804 C H 0.708 G H 0.464 M H 0.433 Y H 0.394 N H 0.533 A H 0.487 S H 0.549 G H 0.501 K H 0.541 Y H 0.636 A H 0.538 A H 0.457 F H 0.388 V T 0.257 G T 0.317 V C 0.563 P C 0.668 A C 0.484 K C 0.404 S C 0.465 G S 0.320 V C 0.427 S C 0.359 G E 0.438 G E 0.831 I E 0.894 M E 0.945 A E 0.945 L E 0.806 V E 0.603 P C 0.677 P H 0.257 S H 0.322 A H 0.388 R H 0.450 R T 0.320 E H 0.321 Q S 0.352 P C 0.344 F C 0.381 Q T 0.346 S T 0.548 G C 0.351 C E 0.706 G E 0.963 I E 0.985 G E 0.983 I E 0.969 Y E 0.887 G E 0.523 P C 0.437 A C 0.392 I C 0.436 D C 0.651 E T 0.541 Y T 0.699 G T 0.401 N C 0.596 S C 0.456 L H 0.926 T H 0.946 G H 0.980 G H 0.993 M H 0.996 L H 0.997 L H 0.997 K H 0.997 H H 0.995 M H 0.993 A H 0.982 Q H 0.929 E H 0.841 W H 0.474 E T 0.502 L C 0.673 S C 0.547 I C 0.654 F C 0.996 END