PFRMAT SS TARGET T0168 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 11 (1 ABCDEFGHIST ) METHOD The input amino acid frequencies were determined from METHOD alignment T0168.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 36 METHOD MODEL 1 M H 0.711 K H 0.808 E H 0.814 L H 0.771 I H 0.648 K H 0.482 E H 0.404 H E 0.259 Q E 0.368 K H 0.241 D E 0.351 I S 0.235 N H 0.266 P H 0.413 A H 0.474 L H 0.701 Q H 0.724 L H 0.867 H H 0.904 D H 0.927 W H 0.925 V H 0.837 E H 0.775 Y H 0.710 Y H 0.321 R E 0.256 P H 0.435 F E 0.221 A B 0.167 A H 0.305 N B 0.321 G S 0.443 Q B 0.420 S E 0.274 A E 0.176 N H 0.202 Y S 0.371 I H 0.348 P H 0.580 A H 0.615 L H 0.531 G H 0.465 K S 0.374 V B 0.359 N A 0.381 D I 0.536 S H 0.323 Q S 0.275 L E 0.260 G E 0.415 I E 0.607 C E 0.604 V E 0.559 L E 0.661 E C 0.737 P H 0.576 D B 0.748 G S 0.586 T B 0.627 M A 0.585 I B 0.244 H B 0.281 A G 0.272 G S 0.225 D E 0.282 W I 0.215 N S 0.369 V B 0.411 S A 0.305 F B 0.358 T E 0.351 M E 0.352 Q H 0.381 S E 0.257 I H 0.702 S H 0.833 K H 0.920 V H 0.937 I H 0.935 S H 0.966 F H 0.944 I H 0.928 A H 0.944 A H 0.900 C H 0.792 M H 0.747 S H 0.473 R B 0.515 G C 0.257 I H 0.711 P H 0.847 Y H 0.875 V H 0.843 L H 0.704 D H 0.547 R H 0.324 V B 0.345 D S 0.213 V B 0.292 E B 0.244 P E 0.127 T B 0.192 G S 0.495 D C 0.308 A B 0.213 F H 0.237 N H 0.263 S H 0.273 I H 0.482 I H 0.588 R H 0.318 L B 0.350 E E 0.266 I H 0.287 N H 0.237 K C 0.173 P B 0.210 G S 0.693 K B 0.458 P E 0.245 F B 0.148 N E 0.270 P H 0.366 M S 0.334 I H 0.322 N H 0.348 A H 0.637 G H 0.755 A H 0.871 L H 0.837 T H 0.762 I H 0.703 A H 0.527 S H 0.413 I H 0.312 L B 0.198 P H 0.286 G S 0.544 E B 0.275 S B 0.398 A H 0.591 Y H 0.845 E H 0.882 K H 0.884 L H 0.915 E H 0.947 F H 0.950 L H 0.951 Y H 0.958 S H 0.966 V H 0.939 M H 0.860 E H 0.858 T H 0.717 L H 0.484 I H 0.219 G S 0.388 K S 0.192 R E 0.286 P E 0.403 R E 0.366 I B 0.242 H B 0.400 E H 0.354 E H 0.521 V H 0.410 F H 0.270 R H 0.209 S B 0.337 E H 0.480 W H 0.435 E H 0.474 T H 0.334 A H 0.333 H H 0.634 R H 0.776 N H 0.827 R H 0.876 A H 0.937 L H 0.933 A H 0.934 Y H 0.959 Y H 0.959 L H 0.920 K H 0.792 E H 0.762 T B 0.632 N S 0.462 F E 0.185 L B 0.283 E H 0.254 A H 0.317 E H 0.250 V H 0.636 E H 0.881 E H 0.924 T H 0.887 L H 0.854 E H 0.904 V H 0.900 Y H 0.860 L H 0.813 K H 0.795 Q H 0.669 C H 0.600 A H 0.568 M H 0.554 E H 0.398 S H 0.347 T H 0.265 T H 0.731 E H 0.916 D H 0.910 I H 0.904 A H 0.949 L H 0.974 I H 0.960 G H 0.934 L H 0.958 I H 0.975 L H 0.931 A H 0.775 H H 0.562 D B 0.561 G S 0.313 Y B 0.555 H E 0.654 P H 0.405 I G 0.340 R B 0.389 H S 0.551 E B 0.441 Q B 0.386 V E 0.286 I B 0.468 P B 0.585 K H 0.663 D H 0.832 V H 0.837 A H 0.907 K H 0.914 L H 0.909 A H 0.844 K H 0.817 A H 0.809 L H 0.819 M H 0.762 L H 0.691 T H 0.584 C B 0.284 G S 0.398 M H 0.340 Y B 0.192 N H 0.248 A H 0.349 S B 0.359 G S 0.308 K H 0.505 Y H 0.480 A H 0.451 A H 0.302 F H 0.279 V B 0.263 G D 0.191 V B 0.254 P E 0.139 A B 0.194 K S 0.159 S G 0.156 G S 0.350 V A 0.173 S G 0.181 G S 0.280 G E 0.361 I E 0.510 M E 0.479 A E 0.500 L E 0.392 V B 0.413 P B 0.335 P H 0.285 S H 0.299 A B 0.190 R I 0.216 R H 0.305 E S 0.223 Q B 0.284 P B 0.161 F E 0.278 Q G 0.182 S E 0.153 G A 0.210 C E 0.368 G E 0.565 I E 0.684 G E 0.528 I E 0.356 Y S 0.170 G C 0.245 P H 0.161 A B 0.202 I B 0.280 D C 0.319 E H 0.452 Y B 0.455 G S 0.431 N E 0.260 S B 0.310 L H 0.580 T H 0.799 G H 0.878 G H 0.941 M H 0.960 L H 0.971 L H 0.952 K H 0.953 H H 0.965 M H 0.874 A H 0.868 Q H 0.760 E H 0.588 W B 0.687 E S 0.465 L E 0.280 S E 0.445 I H 0.191 F E 0.301 END