PFRMAT SS
TARGET T0168
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0168.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 36
METHOD
MODEL 1
M H 0.711
K H 0.808
E H 0.814
L H 0.771
I H 0.648
K H 0.482
E H 0.404
H E 0.259
Q E 0.368
K H 0.241
D E 0.351
I S 0.235
N H 0.266
P H 0.413
A H 0.474
L H 0.701
Q H 0.724
L H 0.867
H H 0.904
D H 0.927
W H 0.925
V H 0.837
E H 0.775
Y H 0.710
Y H 0.321
R E 0.256
P H 0.435
F E 0.221
A B 0.167
A H 0.305
N B 0.321
G S 0.443
Q B 0.420
S E 0.274
A E 0.176
N H 0.202
Y S 0.371
I H 0.348
P H 0.580
A H 0.615
L H 0.531
G H 0.465
K S 0.374
V B 0.359
N A 0.381
D I 0.536
S H 0.323
Q S 0.275
L E 0.260
G E 0.415
I E 0.607
C E 0.604
V E 0.559
L E 0.661
E C 0.737
P H 0.576
D B 0.748
G S 0.586
T B 0.627
M A 0.585
I B 0.244
H B 0.281
A G 0.272
G S 0.225
D E 0.282
W I 0.215
N S 0.369
V B 0.411
S A 0.305
F B 0.358
T E 0.351
M E 0.352
Q H 0.381
S E 0.257
I H 0.702
S H 0.833
K H 0.920
V H 0.937
I H 0.935
S H 0.966
F H 0.944
I H 0.928
A H 0.944
A H 0.900
C H 0.792
M H 0.747
S H 0.473
R B 0.515
G C 0.257
I H 0.711
P H 0.847
Y H 0.875
V H 0.843
L H 0.704
D H 0.547
R H 0.324
V B 0.345
D S 0.213
V B 0.292
E B 0.244
P E 0.127
T B 0.192
G S 0.495
D C 0.308
A B 0.213
F H 0.237
N H 0.263
S H 0.273
I H 0.482
I H 0.588
R H 0.318
L B 0.350
E E 0.266
I H 0.287
N H 0.237
K C 0.173
P B 0.210
G S 0.693
K B 0.458
P E 0.245
F B 0.148
N E 0.270
P H 0.366
M S 0.334
I H 0.322
N H 0.348
A H 0.637
G H 0.755
A H 0.871
L H 0.837
T H 0.762
I H 0.703
A H 0.527
S H 0.413
I H 0.312
L B 0.198
P H 0.286
G S 0.544
E B 0.275
S B 0.398
A H 0.591
Y H 0.845
E H 0.882
K H 0.884
L H 0.915
E H 0.947
F H 0.950
L H 0.951
Y H 0.958
S H 0.966
V H 0.939
M H 0.860
E H 0.858
T H 0.717
L H 0.484
I H 0.219
G S 0.388
K S 0.192
R E 0.286
P E 0.403
R E 0.366
I B 0.242
H B 0.400
E H 0.354
E H 0.521
V H 0.410
F H 0.270
R H 0.209
S B 0.337
E H 0.480
W H 0.435
E H 0.474
T H 0.334
A H 0.333
H H 0.634
R H 0.776
N H 0.827
R H 0.876
A H 0.937
L H 0.933
A H 0.934
Y H 0.959
Y H 0.959
L H 0.920
K H 0.792
E H 0.762
T B 0.632
N S 0.462
F E 0.185
L B 0.283
E H 0.254
A H 0.317
E H 0.250
V H 0.636
E H 0.881
E H 0.924
T H 0.887
L H 0.854
E H 0.904
V H 0.900
Y H 0.860
L H 0.813
K H 0.795
Q H 0.669
C H 0.600
A H 0.568
M H 0.554
E H 0.398
S H 0.347
T H 0.265
T H 0.731
E H 0.916
D H 0.910
I H 0.904
A H 0.949
L H 0.974
I H 0.960
G H 0.934
L H 0.958
I H 0.975
L H 0.931
A H 0.775
H H 0.562
D B 0.561
G S 0.313
Y B 0.555
H E 0.654
P H 0.405
I G 0.340
R B 0.389
H S 0.551
E B 0.441
Q B 0.386
V E 0.286
I B 0.468
P B 0.585
K H 0.663
D H 0.832
V H 0.837
A H 0.907
K H 0.914
L H 0.909
A H 0.844
K H 0.817
A H 0.809
L H 0.819
M H 0.762
L H 0.691
T H 0.584
C B 0.284
G S 0.398
M H 0.340
Y B 0.192
N H 0.248
A H 0.349
S B 0.359
G S 0.308
K H 0.505
Y H 0.480
A H 0.451
A H 0.302
F H 0.279
V B 0.263
G D 0.191
V B 0.254
P E 0.139
A B 0.194
K S 0.159
S G 0.156
G S 0.350
V A 0.173
S G 0.181
G S 0.280
G E 0.361
I E 0.510
M E 0.479
A E 0.500
L E 0.392
V B 0.413
P B 0.335
P H 0.285
S H 0.299
A B 0.190
R I 0.216
R H 0.305
E S 0.223
Q B 0.284
P B 0.161
F E 0.278
Q G 0.182
S E 0.153
G A 0.210
C E 0.368
G E 0.565
I E 0.684
G E 0.528
I E 0.356
Y S 0.170
G C 0.245
P H 0.161
A B 0.202
I B 0.280
D C 0.319
E H 0.452
Y B 0.455
G S 0.431
N E 0.260
S B 0.310
L H 0.580
T H 0.799
G H 0.878
G H 0.941
M H 0.960
L H 0.971
L H 0.952
K H 0.953
H H 0.965
M H 0.874
A H 0.868
Q H 0.760
E H 0.588
W B 0.687
E S 0.465
L E 0.280
S E 0.445
I H 0.191
F E 0.301
END