# List of top-scoring protein chains for t2k-100-30-dssp_ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1i2sA 282 4.27e-03 4blmA 265 1.93e-02 1btl e.3.1.1 42721 1bza 262 8.12e-02 1btl e.3.1.1 42701 1bsg 266 1.79e-01 1btl e.3.1.1 42729 1ghpA 258 2.61e-01 1btl e.3.1.1 60520 1hqvA 191 3.26e-01 1hqvA a.39.1.8 61160 1alq 266 3.37e-01 1btl e.3.1.1 42707 1pioA 257 4.54e-01 1btl e.3.1.1 42719 1fw9A 164 4.68e-01 1fw9A d.190.1.1 60059 1hzoA 271 5.20e-01 1bueA 265 5.48e-01 1btl e.3.1.1 42727 1ei5A 520 5.98e-01 1ei5A b.61.3.1 27418 b.61.3.1 27419 e.3.1.1 42772 1g6aA 271 6.23e-01 1btl e.3.1.1 42704 3blm 257 1.12e+00 1btl e.3.1.1 42709 1btl 263 1.17e+00 1btl e.3.1.1 42691 1ermA 263 1.22e+00 1btl e.3.1.1 42690 1fqgA 263 1.28e+00 1btl e.3.1.1 42699 1l7uA 263 1.40e+00 1m40A 263 1.40e+00 1dgfA 497 1.76e+00 1cf9A e.5.1.1 42782 2lbd 267 2.11e+00 2lbd a.123.1.1 19287 2sqcA 631 2.30e+00 2sqcA a.102.4.2 18854 a.102.4.2 18855 1mmoD 512 2.30e+00 1mhyD a.25.1.2 16770 1sqc 631 2.30e+00 2sqcA a.102.4.2 18858 a.102.4.2 18859 1fcyA 236 2.33e+00 2lbd a.123.1.1 19282 4lbd 267 2.39e+00 2lbd a.123.1.1 19289 7catA 506 2.43e+00 1cf9A e.5.1.1 42781 1dd5A 185 2.64e+00 1dd5A d.67.3.1 39564 1mtyD 512 3.19e+00 1mhyD a.25.1.2 16742 1volA 204 3.33e+00 1tfb a.74.1.2 18370 a.74.1.2 18371 1el4A 195 3.57e+00 1ej3A a.39.1.5 59453 1ucyE 109 3.64e+00 1ucyE 1prgA 270 3.80e+00 2prgA a.123.1.1 19314 1ad1A 266 3.91e+00 1aj2 c.1.21.1 29668 1aq6A 253 4.04e+00 1qq5A c.108.1.1 43331 1fm9D 272 4.21e+00 2prgA a.123.1.1 19313 1eguA 731 4.34e+00 1eguA a.102.3.2 18850 b.24.1.1 23899 b.30.3.1 24423 1cf9A 753 4.83e+00 1cf9A c.23.16.3 31441 e.5.1.1 42815 1jf2A 195 5.08e+00 1ej3A a.39.1.5 62930 1qq5A 253 5.13e+00 1qq5A c.108.1.1 43327 1qq7A 253 5.27e+00 1qq5A c.108.1.1 43329 1keaA 221 5.37e+00 a.96.1.2 68491 1ncx 162 5.46e+00 1ncx a.39.1.5 17222 1top 162 5.46e+00 1ncx a.39.1.5 17223 2nef 136 5.46e+00 1efnB d.102.1.1 40704 2bmhA 455 5.67e+00 1bu7A a.104.1.1 18941 1k0dA 260 5.84e+00 a.45.1.1 67930 c.47.1.5 67931 2bltA 361 6.32e+00 1gceA e.3.1.1 42739 1h8dH 260 7.13e+00 5ptp 3crxA 343 7.27e+00 4crxA a.60.9.1 18101 d.163.1.1 42161 1d5rA 324 7.55e+00 1d5rA b.7.1.1 23181 c.45.1.1 32697 1furA 467 7.58e+00 1furA a.127.1.1 19403 1qb2A 109 7.67e+00 1qb2A a.36.1.1 17125 1e7uA 961 7.78e+00 1e8xA a.118.1.6 19147 b.7.1.1 23182 d.15.1.5 37630 d.144.1.4 41710 1kktA 511 7.80e+00 a.102.2.1 68687 2cae 484 8.12e+00 1cf9A e.5.1.1 42810 1fuoA 467 8.17e+00 1furA a.127.1.1 19411 1e8yA 966 8.37e+00 1e8xA a.118.1.6 19152 b.7.1.1 23187 d.15.1.5 37635 d.144.1.4 41715 1k4wA 252 8.66e+00 1f5mB 180 8.67e+00 1f5mB d.110.2.1 40896 1f5mA 180 8.69e+00 1f5mB d.110.2.1 40895 1hqoA 258 8.69e+00 1hqoA a.45.1.1 17749 c.47.1.5 33043 1qlwA 328 9.06e+00 1qlwA c.69.1.15 34722 1c5lH 259 9.08e+00 5ptp 1ahtH 259 9.12e+00 5ptp 1auiB 169 9.31e+00 1auiB a.39.1.5 17325 8kme2 259 9.61e+00 1ucyE 1pd21 199 1.00e+01 1pd21 1regX 122 1.02e+01 1regX d.58.27.1 39406 1hbzA 498 1.03e+01 1cf9A e.5.1.1 60937 1fs1B 141 1.06e+01 1vcbB a.122.1.1 19252 d.42.1.2 38664 1l1zA 274 1.08e+01 1gceA 364 1.08e+01 1gceA e.3.1.1 42738 1gdoB 240 1.08e+01 1gdoA d.153.1.1 41805 1g5pA 289 1.11e+01 1cp2A c.37.1.10 32253 1efnB 152 1.19e+01 1efnB d.102.1.1 40699 1ga0A 364 1.19e+01 1gceA e.3.1.1 60410 3erdA 261 1.23e+01 3erdA a.123.1.1 19293 1jrrA 382 1.24e+01 e.1.1.1 63256 1spgA 144 1.28e+01 1abwA a.1.1.2 15409 1ax4A 467 1.32e+01 1ax4A c.67.1.2 34391 1elvA 333 1.32e+01 5ptp b.47.1.2 59454 g.18.1.1 59455 1l2iA 261 1.32e+01 1g0cA 364 1.33e+01 7a3hA c.1.8.3 60165 1bcpD 110 1.34e+01 1bcpD b.40.2.1 25132 1dq3A 454 1.34e+01 1dq3A b.86.1.2 28380 d.50.3.1 38798 d.95.2.2 40585 d.95.2.2 40586 1fa0A 537 1.36e+01 1fa0B d.58.16.1 39335 e.9.1.2 43229 1rcb 129 1.36e+01 1rcb a.26.1.2 16854 1jgjA 217 1.37e+01 1c3wA f.2.1.1 62952 1itm 130 1.41e+01 1rcb a.26.1.2 16858 1crxA 322 1.42e+01 4crxA a.60.9.1 18097 d.163.1.1 42157 2prgA 271 1.42e+01 2prgA a.123.1.1 19311 1abv 134 1.44e+01 1abv a.70.1.1 18317 1toh 343 1.46e+01 4pah d.178.1.1 42573 1fqvD 149 1.47e+01 1fqvD a.122.1.1 19263 d.42.1.2 38667 1qf6A 642 1.51e+01 1qf6A c.51.1.1 33210 d.66.1.1 39551 d.67.1.1 39562 d.104.1.1 40759 1fqvJ 149 1.51e+01 1fqvD a.122.1.1 19266 d.42.1.2 38670 1ezvD 245 1.52e+01 1be3D a.3.1.3 59546 f.2.1.8 59547 1k82A 268 1.60e+01 1euvA 221 1.61e+01 1euvA d.3.1.7 37133 1chkA 238 1.65e+01 1chkA d.2.1.7 36999 1k28A 584 1.66e+01 b.40.8.1 68049 b.108.1.2 68050 d.2.1.3 68051 1axn 323 1.75e+01 1avc a.65.1.1 18149 2gwxA 267 1.76e+01 2prgA a.123.1.1 19323 1jmrA 249 1.78e+01 1b8dA 164 1.78e+01 1cpcA a.1.1.3 15665 1qa9A 102 1.80e+01 1qa9A b.1.1.1 19742 1i5nA 146 1.84e+01 1i5nA a.24.10.3 61805 1gt8D 1025 1.85e+01 1ikzA 142 1.88e+01 1wdcC 156 1.91e+01 1wdcC a.39.1.5 17317 4crxA 322 1.92e+01 4crxA a.60.9.1 18095 d.163.1.1 42155 1qkmA 255 1.95e+01 3erdA a.123.1.1 19309 1ek8A 185 1.95e+01 1ek8A d.67.3.1 59444 1prtD 110 1.95e+01 1bcpD b.40.2.1 25128 1fr1A 361 1.98e+01 1gceA e.3.1.1 42734 1taq 832 1.99e+01 1taq a.60.7.1 18082 c.53.1.2 33352 c.55.3.5 33698 e.8.1.1 42991 1e8xA 961 1.99e+01 1e8xA a.118.1.6 19148 b.7.1.1 23183 d.15.1.5 37631 d.144.1.4 41711 1fg7A 356 2.00e+01 1gewA c.67.1.1 59819 1ciy 590 2.03e+01 1ciy b.18.1.3 23720 b.77.2.1 27977 f.1.3.1 43392 1qazA 351 2.03e+01 1qazA a.102.3.1 18848 1dfoA 417 2.04e+01 1bj4A c.67.1.4 34480 1hs6A 611 2.05e+01 1hs6A a.118.1.7 61233 b.98.1.1 61234 d.92.1.13 61235 1k8kD 300 2.06e+01 d.198.2.1 68309 d.198.2.1 68310 1a36A 592 2.07e+01 1a36A a.2.8.1 15715 d.163.1.2 42173 e.15.1.1 43266 1ggqA 174 2.10e+01 1ggqA a.24.12.1 60486 1j9yA 385 2.12e+01 1j9yA c.1.8.3 62791 1vhrA 184 2.13e+01 1vhrA c.45.1.1 32651 1epxA 370 2.19e+01 1fbaA c.1.10.1 29150 1gdoA 240 2.25e+01 1gdoA d.153.1.1 41804 1lvfA 110 2.26e+01 1gewA 356 2.29e+01 1gewA c.67.1.1 60470 1i7wB 151 2.30e+01 1i7wB j.71.1.1 61910 1k8kG 151 2.31e+01 a.118.13.1 68313 1clc 639 2.35e+01 1clc a.102.1.2 18835 b.1.1.5 21872 1a28A 256 2.35e+01 1a28A a.123.1.1 19290 1i7gA 287 2.36e+01 1nipA 289 2.36e+01 1cp2A c.37.1.10 32263 1fqtA 112 2.43e+01 1fqtA b.33.1.1 24441 1gt8B 1025 2.45e+01 1fsyA 358 2.46e+01 1gceA e.3.1.1 60016 2blsA 358 2.49e+01 1gceA e.3.1.1 42747 1gteD 1025 2.50e+01 1fp6A 289 2.50e+01 1cp2A c.37.1.10 32243 1lgr 468 2.50e+01 1lgr d.15.9.1 37837 d.128.1.1 41167 2lgsA 468 2.50e+01 1lgr d.15.9.1 37838 d.128.1.1 41168 1h7wA 1025 2.50e+01 1h7wA a.1.2.2 15683 c.1.4.1 28628 c.3.1.1 30324 c.4.1.1 30609 d.58.1.5 39007 1jfrA 262 2.56e+01 1jfrA c.69.1.16 34724 1h68A 239 2.56e+01 f.2.1.1 60664 1gteA 1025 2.67e+01 1fa0B 537 2.67e+01 1fa0B d.58.16.1 39336 e.9.1.2 43230 1e25A 282 2.68e+01 1e25A e.3.1.1 42731 1kl1A 419 2.69e+01 1que 303 2.70e+01 1fnc b.43.4.2 25647 c.25.1.1 31537 1gthB 1025 2.70e+01 1gthC 1025 2.71e+01 1gthD 1025 2.72e+01 1h7xA 1025 2.74e+01 1h7wA a.1.2.2 15687 c.1.4.1 28632 c.3.1.1 30328 c.4.1.1 30613 d.58.1.5 39011 1efyA 350 2.74e+01 1a26 a.41.1.1 17413 d.166.1.2 42275 1gthA 1025 2.74e+01 1i3dA 146 2.76e+01 a.1.1.2 61587 1h7wD 1025 2.80e+01 a.1.2.2 15686 c.1.4.1 28631 c.3.1.1 30327 c.4.1.1 30612 d.58.1.5 39010 1h7wB 1025 2.80e+01 a.1.2.2 15684 c.1.4.1 28629 c.3.1.1 30325 c.4.1.1 30610 d.58.1.5 39008 1pbv 195 2.80e+01 1pbv a.118.3.1 19179 1adoA 363 2.82e+01 1fbaA c.1.10.1 29124 1a4pA 96 2.83e+01 1b4cA a.39.1.2 17176 1jnxX 214 2.89e+01 c.15.1.3 63201 c.15.1.3 63202 1igwA 434 2.91e+01 c.1.12.6 62370 1qo7A 394 2.98e+01 1qo7A c.69.1.11 34697 1et0A 269 3.03e+01 1et0A e.17.1.1 43289 1qamA 244 3.05e+01 2ercA c.66.1.9 34220 3xis 387 3.11e+01 4xis c.1.15.3 29423 1ckmA 330 3.15e+01 1ckmA b.40.4.6 25358 d.142.2.3 41585 1a59 378 3.15e+01 1aj8A a.103.1.1 18902 1gw9A 388 3.15e+01 2spo 154 3.17e+01 1a6m a.1.1.2 15053 1gpr 162 3.26e+01 1gpr b.84.3.1 28267 4xis 387 3.27e+01 4xis c.1.15.3 29421 1gmuA 143 3.27e+01 b.107.1.1 65335 d.58.38.1 65336 1erjA 393 3.28e+01 1erjA b.69.4.1 27660 1e2gA 215 3.29e+01 3tmkA c.37.1.1 59165 1irdB 146 3.31e+01 a.1.1.2 66287 1mgn 154 3.35e+01 1a6m a.1.1.2 15097 1gt8A 1025 3.35e+01 1kpsB 171 3.36e+01 a.118.12.1 68787 1hziA 129 3.38e+01 1rcb a.26.1.2 61449 1qaxA 428 3.40e+01 1qaxA d.58.20.1 39376 d.179.1.1 42597 1gks 78 3.43e+01 1cc5 a.3.1.1 15909 1c0pA 363 3.50e+01 1an9A c.4.1.2 30647 d.16.1.3 37934 1kao 167 3.52e+01 1ctqA c.37.1.8 32014 2int 129 3.53e+01 1rcb a.26.1.2 16855 1e9eA 215 3.53e+01 c.37.1.1 64810 1kxqE 120 3.59e+01 1f16A 192 3.59e+01 1f16A f.1.4.1 43400 1jpzA 473 3.61e+01 a.104.1.1 67069 3fapB 94 3.63e+01 1nsgB a.24.7.1 16612 1gya 105 3.74e+01 1qa9A b.1.1.1 19745 1dceB 331 3.79e+01 1dceB a.102.4.3 18872 2dtr 226 3.81e+01 1bi0 a.4.5.24 16193 a.76.1.1 18399 b.34.1.2 24450 1f89A 291 3.85e+01 d.160.1.1 64988 2xis 387 3.86e+01 4xis c.1.15.3 29427 1e2fA 215 3.91e+01 3tmkA c.37.1.1 59164 1d2kA 392 3.92e+01 1d2kA c.1.8.5 29008 d.26.3.1 38442 1fsz 372 3.95e+01 1fsz c.32.1.1 31750 d.79.2.1 39802 1psrA 100 3.98e+01 1psrA a.39.1.2 17180