echo "InfilePrefix decoys/"> read-decoys.script ls decoys/*T0167*pdb* \ | sed 's;decoys/;ReadConformPDB ;' \ >> read-decoys.script echo "InfilePrefix" >> read-decoys.script ls robetta[1-5]*pdb* \ | sed 's;rob;ReadConformPDB rob;' \ >> read-decoys.script ls: robetta[1-5]*pdb*: No such file or directory chgrp protein read-decoys.script chmod g+w read-decoys.script /cse/faculty/karplus/undertaker/undertaker < /projects/compbio/experiments/casp5/scripts-human/compare-real.under # command:# SetRealCost created real_cost = # ( 1 * rmsd-ca + 1 * rmsd ) # command:# Prefix for input files set to # command:# reading script from file define-score.script # Prefix for input files set to /projects/kestrel/users/karplus/burial/undertaker/atoms-inputs/ # reading monomeric-50pc.atoms # After reading monomeric-50pc.atoms have 448 chains in training database # 111547 residues have no bad marker # 670 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 28 # Note: may sum to more than number of residues, # because one residue may have multiple problems # Reading rotamer library from monomeric-50pc.rot # Prefix for input files set to /projects/kestrel/users/karplus/burial/undertaker/spots/ # ReadAtomType pdb-name.types Read AtomType pdb-name with 37 types. # ReadClashTable pdb-atom-name.clash # Read ClashTable pdb-atom-name Reading spots from monomeric-50pc-dry-5.spot. Read prototypes from /projects/kestrel/users/karplus/burial/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 Reading spots from monomeric-50pc-wet-6.5.spot. Read prototypes from /projects/kestrel/users/karplus/burial/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 Reading spots from monomeric-50pc-dry-6.5.spot. Read prototypes from /projects/kestrel/users/karplus/burial/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 Reading spots from monomeric-50pc-generic-6.5.spot. Read prototypes from /projects/kestrel/users/karplus/burial/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 Reading spots from monomeric-50pc-dry-8.spot. Read prototypes from /projects/kestrel/users/karplus/burial/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 Reading spots from monomeric-50pc-dry-10.spot. Read prototypes from /projects/kestrel/users/karplus/burial/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 Reading spots from monomeric-50pc-dry-12.spot. Read prototypes from /projects/kestrel/users/karplus/burial/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 # reading histogram from monomeric-smoothed-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # reading histogram from monomeric-smoothed-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins CPU_time= 10580 msec, elapsed time= 12073.4 msec) # Prefix for input files set to # Reading target chain from PDB file T0167.blank.pdb Read PDB file T0167.blank.pdb as target. Have 185 residues and 1398 atoms. # No conformations to remove in PopConform # Prefix for input files set to /projects/compbio/lib/alphabet/ # Read 3 alphabets from alpha.alphabet # Prefix for input files set to # reading predictions from T0167.t2k.alpha.rdb # created predicted alpha cost function pred_alpha2 with 360 bins # SetCost created cost = # ( 0.2 * gen6.5(6.5) + 0.5 * wet6.5(6.5, /log(length)) + 2 * dry5(5) + 9 * dry6.5(6.5) + 4 * dry8(8) + 1 * dry12(12) + 0.7 * phobic_fit + 0.2 * sidechain + 1 * clashes + -0.2 * sidechain_clashes + 0.5 * backbone_clashes + 15 * break + 1 * pred_alpha2 + 0.03 * constraints + 1 * contact_order ) # command:# Will now start reporting costs to score-decoys-unsorted.rdb # command:CPU_time= 15950 msec, elapsed time= 17584.1 msec) # command:# Prefix for input files set to # command:# reading script from file read-decoys.script # Prefix for input files set to decoys/ # Reading conformation from PDB file T0167.try1+T0167-1jeoA-local-adpstyle1.pw.a2m.gz:1jeoA.2.20.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try1+T0167-1jeoA-simpleSW-adpstyle1.pw.a2m.gz:1jeoA.8.20.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try1+T0167-1moq-2track-p...+T0167-1jeoA-2track-protein-EBGHTL-global-adpstyle1.pw.a2m.gz:1jeoA.0.20.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try1+T0167.t2k-2track-undertaker.a2m:1jeoA.7.20.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try1+T0167.t2k.frag:1jeo...+T0167.t2k.frag:1jeoA.109.112.5.20.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try1+T0167.t2k.frag:1jeoA.109.112.10.20.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try1+T0167.t2k.frag:1jeoA.110.113.2.20.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try1-al10.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try1-al12.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try1-al2.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try1-al4.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try1-al6.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try1-al8.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try1-opt-scwrl.pdb.gz # Reading conformation from PDB file T0167.try1-opt.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try1.0.20.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try1.1.20.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try1.11.20.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try1.12.20.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try1.13.20.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try1.14.20.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try1.15.20.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try1.16.20.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try1.17.20.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try1.18.20.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try1.19.20.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try1.20.20.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try1.3.20.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try1.4.20.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try1.5.20.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try1.6.20.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try1.9.20.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try2-al10.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try2-al12.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try2-al2.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try2-al4.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try2-al6.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try2-al8.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try2-opt-scwrl.pdb.gz # Reading conformation from PDB file T0167.try2-opt.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try2.0.80.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try2.1.80.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try2.10.80.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try2.11.80.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try2.12.80.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try2.13.80.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try2.14.80.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try2.15.80.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try2.16.80.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try2.17.80.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try2.18.80.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try2.19.80.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try2.2.80.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try2.20.80.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try2.3.80.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try2.4.80.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try2.5.80.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try2.6.80.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try2.7.80.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try2.8.80.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try2.9.80.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try3-al10.5.80.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try3-al10.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try3-al12.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try3-al2+T0167-1jeoA.vast.a2m:1jeoA.6.80.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try3-al2.pdb.gz # Reading conformation from PDB file T0167.try3-al4+1moq-T0167-vit-...+T0167-1jeoA-2track-protein-EBGHSTL-local-adpstyle5.pw.a2m.gz:1jeoA.1.80.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try3-al4.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try3-al6-scwrl.10.80.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try3-al6.0.80.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try3-al6.2.80.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try3-al6.4.80.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try3-al6.8.80.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try3-al6.9.80.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try3-al6.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try3-al8+T0167.t2k.frag:1jeoA.109.112.3.80.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try3-al8.7.80.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try3-al8.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try3-opt-scwrl.pdb.gz # Reading conformation from PDB file T0167.try3-opt.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try4-al12.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try4-opt-scwrl.pdb.gz # Reading conformation from PDB file T0167.try4-opt.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try4-try4.1.120.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try4-try4.2.120.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try4-try4.4.120.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try4-try4.6.120.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try4-try4.7.120.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try4-try4.8.120.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try4.0.120.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try4.10.120.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try4.3.120.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try4.5.120.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Reading conformation from PDB file T0167.try4.9.120.pdb.gz Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms Bad short name: CS for alphabet: pdb_atoms # Prefix for input files set to # command:# Prefix for input files set to # command:# Reading conformation from PDB file real.pdb # command:# Saving current conformation as real # command:CPU_time= 25300 msec, elapsed time= 28493.8 msec) # command:# CostConform Not enough atoms (only 0) to locate spot for (T0167)Q136 Not enough atoms (only 0) to locate spot for (T0167)S137 Not enough atoms (only 0) to locate spot for (T0167)N138 Not enough atoms (only 0) to locate spot for (T0167)G139 Not enough atoms (only 0) to locate spot for (T0167)S140 Not enough atoms (only 0) to locate spot for (T0167)Q136 Not enough atoms (only 0) to locate spot for (T0167)S137 Not enough atoms (only 0) to locate spot for (T0167)N138 Not enough atoms (only 0) to locate spot for (T0167)G139 Not enough atoms (only 0) to locate spot for (T0167)S140 Not enough atoms (only 0) to locate spot for (T0167)Q136 Not enough atoms (only 0) to locate spot for (T0167)S137 Not enough atoms (only 0) to locate spot for (T0167)N138 Not enough atoms (only 0) to locate spot for (T0167)G139 Not enough atoms (only 0) to locate spot for (T0167)S140 Not enough atoms (only 0) to locate spot for (T0167)Q136 Not enough atoms (only 0) to locate spot for (T0167)S137 Not enough atoms (only 0) to locate spot for (T0167)N138 Not enough atoms (only 0) to locate spot for (T0167)G139 Not enough atoms (only 0) to locate spot for (T0167)S140 Not enough atoms (only 0) to locate spot for (T0167)Q136 Not enough atoms (only 0) to locate spot for (T0167)S137 Not enough atoms (only 0) to locate spot for (T0167)N138 Not enough atoms (only 0) to locate spot for (T0167)G139 Not enough atoms (only 0) to locate spot for (T0167)S140 Not enough atoms (only 0) to locate spot for (T0167)Q136 Not enough atoms (only 0) to locate spot for (T0167)S137 Not enough atoms (only 0) to locate spot for (T0167)N138 Not enough atoms (only 0) to locate spot for (T0167)G139 Not enough atoms (only 0) to locate spot for (T0167)S140 real.pdb costs 72.2473 real_cost = 0 T0167.try4.9.120.pdb.gz costs 55.6792 real_cost = 14.4646 T0167.try4.5.120.pdb.gz costs 54.536 real_cost = 14.2992 T0167.try4.3.120.pdb.gz costs 55.0166 real_cost = 14.6312 T0167.try4.10.120.pdb.gz costs 53.699 real_cost = 14.3094 T0167.try4.0.120.pdb.gz costs 55.4502 real_cost = 14.5517 T0167.try4-try4.8.120.pdb.gz costs 54.9633 real_cost = 14.5261 T0167.try4-try4.7.120.pdb.gz costs 54.9237 real_cost = 14.7154 T0167.try4-try4.6.120.pdb.gz costs 54.7617 real_cost = 16.2148 T0167.try4-try4.4.120.pdb.gz costs 55.2029 real_cost = 14.8262 T0167.try4-try4.2.120.pdb.gz costs 54.6548 real_cost = 14.8285 T0167.try4-try4.1.120.pdb.gz costs 54.9623 real_cost = 14.648 T0167.try4-opt.pdb.gz costs 53.7002 real_cost = 14.3094 T0167.try4-opt-scwrl.pdb.gz costs 56.036 real_cost = 14.2802 T0167.try4-al12.pdb.gz costs 56.6209 real_cost = 14.3416 T0167.try3-opt.pdb.gz costs 56.6209 real_cost = 14.3416 T0167.try3-opt-scwrl.pdb.gz costs 57.2043 real_cost = 14.3445 T0167.try3-al8.pdb.gz costs 67.5517 real_cost = 11.9741 T0167.try3-al8.7.80.pdb.gz costs 59.7185 real_cost = 14.3116 T0167.try3-al8+T0167.t2k.frag:1jeoA.109.112.3.80.pdb.gz costs 60.9237 real_cost = 10.8748 T0167.try3-al6.pdb.gz costs 67.5517 real_cost = 11.9741 T0167.try3-al6.9.80.pdb.gz costs 57.9131 real_cost = 14.1389 T0167.try3-al6.8.80.pdb.gz costs 59.0534 real_cost = 16.7472 T0167.try3-al6.4.80.pdb.gz costs 61.4014 real_cost = 12.3875 T0167.try3-al6.2.80.pdb.gz costs 60.3978 real_cost = 13.0622 T0167.try3-al6.0.80.pdb.gz costs 58.3234 real_cost = 15.505 T0167.try3-al6-scwrl.10.80.pdb.gz costs 56.6598 real_cost = 14.3416 T0167.try3-al4.pdb.gz costs 68.617 real_cost = 11.448 T0167.try3-al4+1moq-T0167-vit-...+T0167-1jeoA-2track-protein-EBGHSTL-local-adpstyle5.pw.a2m.gz:1jeoA.1.80.pdb.gz costs 60.136 real_cost = 9.43913 T0167.try3-al2.pdb.gz costs 93.3912 real_cost = 37.3299 T0167.try3-al2+T0167-1jeoA.vast.a2m:1jeoA.6.80.pdb.gz costs 60.1495 real_cost = 10.5746 T0167.try3-al12.pdb.gz costs 67.5517 real_cost = 11.9741 T0167.try3-al10.pdb.gz costs 67.5517 real_cost = 11.9741 T0167.try3-al10.5.80.pdb.gz costs 59.5904 real_cost = 14.2999 T0167.try2.9.80.pdb.gz costs 57.9114 real_cost = 12.0682 T0167.try2.8.80.pdb.gz costs 58.6763 real_cost = 11.2356 T0167.try2.7.80.pdb.gz costs 57.6705 real_cost = 13.991 T0167.try2.6.80.pdb.gz costs 57.666 real_cost = 13.9139 T0167.try2.5.80.pdb.gz costs 58.172 real_cost = 11.9017 T0167.try2.4.80.pdb.gz costs 57.7793 real_cost = 11.818 T0167.try2.3.80.pdb.gz costs 57.5932 real_cost = 13.0221 T0167.try2.20.80.pdb.gz costs 55.5796 real_cost = 11.549 T0167.try2.2.80.pdb.gz costs 58.008 real_cost = 11.4198 T0167.try2.19.80.pdb.gz costs 57.9487 real_cost = 12.7256 T0167.try2.18.80.pdb.gz costs 57.1839 real_cost = 11.8549 T0167.try2.17.80.pdb.gz costs 57.0901 real_cost = 11.8012 T0167.try2.16.80.pdb.gz costs 58.0436 real_cost = 11.9818 T0167.try2.15.80.pdb.gz costs 58.1451 real_cost = 12.3519 T0167.try2.14.80.pdb.gz costs 58.5963 real_cost = 13.4271 T0167.try2.13.80.pdb.gz costs 58.0912 real_cost = 12.0171 T0167.try2.12.80.pdb.gz costs 57.2857 real_cost = 11.8497 T0167.try2.11.80.pdb.gz costs 56.7754 real_cost = 11.4376 T0167.try2.10.80.pdb.gz costs 57.2416 real_cost = 11.7133 T0167.try2.1.80.pdb.gz costs 57.358 real_cost = 12.0383 T0167.try2.0.80.pdb.gz costs 57.7889 real_cost = 11.8994 T0167.try2-opt.pdb.gz costs 55.5796 real_cost = 11.549 T0167.try2-opt-scwrl.pdb.gz costs 55.9717 real_cost = 11.5505 T0167.try2-al8.pdb.gz costs 59.596 real_cost = 11.8323 T0167.try2-al6.pdb.gz costs 59.596 real_cost = 11.8323 T0167.try2-al4.pdb.gz costs 59.596 real_cost = 11.8323 T0167.try2-al2.pdb.gz costs 59.596 real_cost = 11.8323 T0167.try2-al12.pdb.gz costs 59.596 real_cost = 11.8323 T0167.try2-al10.pdb.gz costs 59.596 real_cost = 11.8323 T0167.try1.9.20.pdb.gz costs 64.05 real_cost = 12.7352 T0167.try1.6.20.pdb.gz costs 64.4758 real_cost = 11.7914 T0167.try1.5.20.pdb.gz costs 63.5577 real_cost = 11.2585 T0167.try1.4.20.pdb.gz costs 63.6583 real_cost = 10.308 T0167.try1.3.20.pdb.gz costs 61.6043 real_cost = 11.7469 T0167.try1.20.20.pdb.gz costs 60.9003 real_cost = 11.8208 T0167.try1.19.20.pdb.gz costs 64.3366 real_cost = 12.986 T0167.try1.18.20.pdb.gz costs 64.1317 real_cost = 13.2345 T0167.try1.17.20.pdb.gz costs 62.5451 real_cost = 11.3367 T0167.try1.16.20.pdb.gz costs 62.1573 real_cost = 12.8217 T0167.try1.15.20.pdb.gz costs 63.3848 real_cost = 12.3332 T0167.try1.14.20.pdb.gz costs 63.1655 real_cost = 11.9506 T0167.try1.13.20.pdb.gz costs 63.0956 real_cost = 10.7792 T0167.try1.12.20.pdb.gz costs 63.2447 real_cost = 13.1102 T0167.try1.11.20.pdb.gz costs 63.6911 real_cost = 10.046 T0167.try1.1.20.pdb.gz costs 63.8201 real_cost = 11.9423 T0167.try1.0.20.pdb.gz costs 63.6277 real_cost = 10.3547 T0167.try1-opt.pdb.gz costs 60.9003 real_cost = 11.8208 T0167.try1-opt-scwrl.pdb.gz costs 59.596 real_cost = 11.8323 T0167.try1-al8.pdb.gz costs 65.5761 real_cost = 10.8161 T0167.try1-al6.pdb.gz costs 65.5761 real_cost = 10.8161 T0167.try1-al4.pdb.gz costs 64.727 real_cost = 17.4209 T0167.try1-al2.pdb.gz costs 64.727 real_cost = 17.4209 T0167.try1-al12.pdb.gz costs 65.3023 real_cost = 12.1866 T0167.try1-al10.pdb.gz costs 65.3023 real_cost = 12.1866 T0167.try1+T0167.t2k.frag:1jeoA.110.113.2.20.pdb.gz costs 62.7755 real_cost = 10.7448 T0167.try1+T0167.t2k.frag:1jeoA.109.112.10.20.pdb.gz costs 63.539 real_cost = 14.0182 T0167.try1+T0167.t2k.frag:1jeo...+T0167.t2k.frag:1jeoA.109.112.5.20.pdb.gz costs 63.1494 real_cost = 9.88463 T0167.try1+T0167.t2k-2track-undertaker.a2m:1jeoA.7.20.pdb.gz costs 63.867 real_cost = 10.6805 T0167.try1+T0167-1moq-2track-p...+T0167-1jeoA-2track-protein-EBGHTL-global-adpstyle1.pw.a2m.gz:1jeoA.0.20.pdb.gz costs 61.993 real_cost = 13.3414 T0167.try1+T0167-1jeoA-simpleSW-adpstyle1.pw.a2m.gz:1jeoA.8.20.pdb.gz costs 62.8092 real_cost = 13.4557 T0167.try1+T0167-1jeoA-local-adpstyle1.pw.a2m.gz:1jeoA.2.20.pdb.gz costs 63.5327 real_cost = 12.9378 # command:# command:CPU_time= 41830 msec, elapsed time= 45475.3 msec) # command:/projects/compbio/bin/sorttbl rmsd cost < score-decoys-unsorted.rdb > score-real-decoys.rdb rm score-decoys-unsorted.rdb chgrp protein score-real-decoys.rdb chmod g+w score-real-decoys.rdb make: *** No rule to make target `score-real_1-decoys.rdb'. make: *** No rule to make target `score-real_2-decoys.rdb'. make: *** No rule to make target `score-real_3-decoys.rdb'. make: *** No rule to make target `score-real_4-decoys.rdb'.