# TARGET T0166 # Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0166.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 341 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 V 0.001 0.001 0.001 0.004 0.001 0.001 0.995 2 T 0.002 0.005 0.012 0.641 0.003 0.053 0.285 3 D 0.001 0.003 0.010 0.714 0.058 0.078 0.137 4 I 0.001 0.001 0.005 0.912 0.015 0.029 0.037 5 L 0.001 0.001 0.002 0.970 0.008 0.008 0.012 6 R 0.001 0.001 0.001 0.986 0.004 0.005 0.004 7 E 0.001 0.001 0.001 0.993 0.001 0.003 0.002 8 I 0.001 0.001 0.001 0.996 0.001 0.002 0.001 9 G 0.001 0.001 0.001 0.994 0.001 0.004 0.001 10 M 0.001 0.001 0.001 0.993 0.001 0.005 0.001 11 I 0.001 0.001 0.001 0.991 0.001 0.006 0.002 12 A 0.001 0.001 0.001 0.988 0.002 0.008 0.001 13 R 0.001 0.001 0.001 0.977 0.003 0.016 0.003 14 A 0.001 0.001 0.001 0.971 0.003 0.018 0.007 15 L 0.001 0.001 0.001 0.961 0.005 0.019 0.013 16 D 0.001 0.001 0.002 0.949 0.008 0.030 0.009 17 S 0.001 0.001 0.003 0.922 0.008 0.053 0.013 18 I 0.001 0.001 0.003 0.918 0.011 0.039 0.026 19 S 0.001 0.001 0.004 0.930 0.012 0.028 0.024 20 N 0.001 0.001 0.009 0.922 0.013 0.034 0.020 21 I 0.002 0.001 0.011 0.911 0.011 0.048 0.017 22 E 0.001 0.001 0.009 0.904 0.014 0.051 0.020 23 F 0.003 0.002 0.015 0.850 0.032 0.058 0.040 24 K 0.004 0.002 0.056 0.776 0.023 0.097 0.041 25 E 0.003 0.004 0.089 0.536 0.060 0.268 0.040 26 L 0.001 0.002 0.035 0.154 0.093 0.673 0.041 27 S 0.001 0.005 0.010 0.017 0.103 0.681 0.182 28 L 0.004 0.019 0.003 0.007 0.203 0.024 0.740 29 T 0.006 0.010 0.002 0.009 0.097 0.007 0.869 30 R 0.001 0.001 0.104 0.746 0.038 0.077 0.033 31 G 0.003 0.001 0.065 0.838 0.014 0.061 0.018 32 Q 0.009 0.002 0.027 0.921 0.009 0.013 0.019 33 Y 0.026 0.001 0.003 0.950 0.003 0.003 0.014 34 L 0.053 0.001 0.002 0.927 0.003 0.005 0.009 35 Y 0.069 0.001 0.004 0.914 0.002 0.006 0.004 36 L 0.067 0.001 0.004 0.917 0.003 0.005 0.004 37 V 0.033 0.001 0.008 0.945 0.003 0.007 0.004 38 R 0.033 0.001 0.012 0.927 0.005 0.017 0.006 39 V 0.027 0.002 0.018 0.883 0.015 0.039 0.015 40 C 0.030 0.002 0.021 0.785 0.032 0.108 0.023 41 E 0.025 0.005 0.028 0.552 0.087 0.176 0.127 42 N 0.019 0.006 0.029 0.103 0.299 0.155 0.389 43 P 0.021 0.004 0.042 0.045 0.208 0.483 0.196 44 G 0.028 0.012 0.033 0.018 0.200 0.344 0.366 45 I 0.046 0.048 0.006 0.009 0.239 0.018 0.635 46 I 0.043 0.058 0.001 0.017 0.077 0.005 0.799 47 Q 0.001 0.001 0.011 0.974 0.004 0.007 0.004 48 E 0.001 0.001 0.010 0.975 0.002 0.010 0.003 49 K 0.001 0.001 0.006 0.986 0.001 0.005 0.002 50 I 0.001 0.001 0.001 0.991 0.002 0.003 0.002 51 A 0.001 0.001 0.002 0.986 0.002 0.006 0.003 52 E 0.001 0.001 0.004 0.975 0.002 0.016 0.002 53 L 0.001 0.001 0.008 0.923 0.003 0.062 0.003 54 I 0.003 0.002 0.013 0.527 0.023 0.415 0.016 55 K 0.006 0.006 0.012 0.113 0.066 0.666 0.131 56 V 0.013 0.034 0.005 0.033 0.363 0.040 0.512 57 D 0.013 0.009 0.005 0.018 0.137 0.016 0.802 58 R 0.001 0.001 0.138 0.689 0.059 0.095 0.017 59 T 0.001 0.001 0.119 0.758 0.028 0.082 0.012 60 T 0.001 0.002 0.115 0.789 0.010 0.065 0.017 61 A 0.001 0.001 0.013 0.952 0.005 0.016 0.012 62 A 0.001 0.001 0.006 0.971 0.004 0.012 0.006 63 R 0.001 0.001 0.003 0.980 0.003 0.010 0.003 64 A 0.001 0.001 0.002 0.990 0.001 0.005 0.002 65 I 0.001 0.001 0.001 0.994 0.001 0.003 0.001 66 K 0.001 0.001 0.001 0.993 0.001 0.005 0.001 67 R 0.001 0.001 0.001 0.992 0.001 0.006 0.001 68 L 0.001 0.001 0.001 0.992 0.001 0.005 0.001 69 E 0.001 0.001 0.004 0.977 0.002 0.014 0.003 70 E 0.001 0.001 0.012 0.866 0.006 0.111 0.004 71 Q 0.001 0.001 0.005 0.103 0.009 0.881 0.002 72 G 0.002 0.001 0.002 0.007 0.046 0.895 0.048 73 F 0.104 0.004 0.002 0.003 0.091 0.015 0.780 74 I 0.779 0.040 0.003 0.003 0.010 0.002 0.163 75 Y 0.848 0.005 0.004 0.005 0.011 0.003 0.125 76 R 0.837 0.006 0.004 0.004 0.020 0.004 0.125 77 Q 0.648 0.003 0.004 0.003 0.049 0.010 0.282 78 E 0.263 0.015 0.003 0.003 0.207 0.013 0.495 79 D 0.066 0.010 0.003 0.002 0.078 0.006 0.836 80 A 0.012 0.002 0.380 0.029 0.088 0.414 0.076 81 S 0.002 0.001 0.306 0.010 0.080 0.583 0.018 82 N 0.008 0.006 0.432 0.008 0.135 0.281 0.131 83 K 0.085 0.007 0.085 0.018 0.283 0.141 0.381 84 K 0.405 0.017 0.037 0.008 0.190 0.071 0.272 85 I 0.735 0.032 0.016 0.004 0.025 0.011 0.179 86 K 0.851 0.004 0.007 0.006 0.016 0.009 0.106 87 R 0.922 0.002 0.003 0.003 0.021 0.006 0.043 88 I 0.903 0.003 0.001 0.004 0.013 0.004 0.072 89 Y 0.792 0.011 0.001 0.003 0.014 0.003 0.176 90 A 0.379 0.034 0.001 0.007 0.037 0.005 0.538 91 T 0.062 0.004 0.001 0.007 0.057 0.006 0.865 92 E 0.003 0.001 0.032 0.790 0.039 0.118 0.018 93 K 0.001 0.001 0.029 0.850 0.025 0.081 0.014 94 G 0.001 0.001 0.025 0.924 0.005 0.041 0.004 95 K 0.001 0.001 0.009 0.965 0.009 0.010 0.006 96 N 0.001 0.001 0.010 0.966 0.003 0.014 0.005 97 V 0.001 0.001 0.010 0.966 0.003 0.016 0.004 98 Y 0.001 0.001 0.006 0.973 0.005 0.013 0.003 99 P 0.001 0.001 0.006 0.959 0.004 0.028 0.003 100 I 0.001 0.001 0.005 0.935 0.003 0.053 0.003 101 I 0.001 0.001 0.004 0.928 0.010 0.042 0.016 102 V 0.001 0.001 0.004 0.933 0.014 0.035 0.013 103 R 0.001 0.001 0.004 0.931 0.014 0.033 0.016 104 E 0.001 0.001 0.004 0.947 0.009 0.021 0.018 105 N 0.001 0.001 0.001 0.969 0.007 0.012 0.010 106 Q 0.001 0.001 0.001 0.972 0.006 0.014 0.007 107 H 0.001 0.001 0.001 0.981 0.003 0.010 0.005 108 S 0.001 0.001 0.001 0.978 0.003 0.011 0.007 109 N 0.001 0.001 0.001 0.977 0.004 0.013 0.004 110 Q 0.001 0.001 0.002 0.973 0.005 0.014 0.006 111 V 0.001 0.001 0.003 0.963 0.006 0.020 0.007 112 A 0.001 0.001 0.010 0.940 0.009 0.028 0.012 113 L 0.001 0.001 0.088 0.755 0.016 0.120 0.019 114 Q 0.001 0.001 0.083 0.295 0.019 0.590 0.012 115 G 0.001 0.002 0.052 0.112 0.031 0.753 0.050 116 L 0.001 0.006 0.003 0.012 0.432 0.017 0.530 117 S 0.001 0.002 0.001 0.006 0.054 0.002 0.936 118 E 0.001 0.001 0.011 0.955 0.010 0.017 0.006 119 V 0.001 0.001 0.010 0.974 0.002 0.011 0.003 120 E 0.001 0.001 0.005 0.987 0.001 0.005 0.002 121 I 0.001 0.001 0.001 0.996 0.001 0.002 0.001 122 S 0.001 0.001 0.001 0.990 0.002 0.006 0.002 123 Q 0.001 0.001 0.001 0.988 0.001 0.009 0.001 124 L 0.001 0.001 0.001 0.993 0.002 0.003 0.002 125 A 0.001 0.001 0.001 0.995 0.001 0.003 0.001 126 D 0.001 0.001 0.001 0.993 0.001 0.005 0.001 127 Y 0.001 0.001 0.001 0.993 0.001 0.006 0.001 128 L 0.001 0.001 0.001 0.995 0.001 0.003 0.001 129 V 0.001 0.001 0.001 0.991 0.001 0.006 0.001 130 R 0.001 0.001 0.001 0.988 0.001 0.009 0.001 131 M 0.001 0.001 0.002 0.982 0.002 0.010 0.003 132 R 0.001 0.001 0.007 0.957 0.002 0.031 0.002 133 K 0.001 0.001 0.008 0.814 0.006 0.169 0.004 134 N 0.001 0.001 0.015 0.591 0.025 0.327 0.040 135 V 0.001 0.005 0.039 0.550 0.079 0.183 0.143 136 S 0.002 0.004 0.134 0.541 0.079 0.148 0.092 137 E 0.004 0.006 0.098 0.513 0.150 0.132 0.098 138 D 0.004 0.004 0.083 0.636 0.053 0.097 0.122 139 W 0.003 0.001 0.063 0.843 0.013 0.052 0.025 140 E 0.007 0.001 0.067 0.830 0.013 0.040 0.043 141 F 0.007 0.004 0.053 0.871 0.009 0.035 0.021 142 V 0.010 0.010 0.022 0.854 0.022 0.042 0.039 143 K 0.009 0.008 0.030 0.730 0.025 0.148 0.049 144 K 0.003 0.001 0.018 0.300 0.113 0.514 0.050 145 G 0.003 0.003 0.013 0.049 0.138 0.667 0.127 146 N 0.015 0.027 0.005 0.017 0.194 0.036 0.706 147 T 0.026 0.019 0.029 0.035 0.184 0.108 0.599 148 R 0.036 0.019 0.047 0.047 0.196 0.167 0.487 149 N 0.026 0.034 0.031 0.036 0.023 0.095 0.754 150 Y 0.001 0.001 0.001 0.002 0.001 0.001 0.995