PFRMAT SS
TARGET T0166
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0166.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 341
METHOD
MODEL 1
V H 0.392
T H 0.656
D H 0.797
I H 0.883
L H 0.939
R H 0.961
E H 0.966
I H 0.952
G H 0.963
M H 0.965
I H 0.952
A H 0.942
R H 0.938
A H 0.923
L H 0.872
D H 0.855
S H 0.774
I H 0.796
S H 0.640
N H 0.739
I H 0.819
E H 0.775
F H 0.646
K H 0.594
E H 0.564
L B 0.624
S S 0.438
L B 0.411
T B 0.525
R H 0.515
G H 0.778
Q H 0.826
Y H 0.898
L H 0.949
Y H 0.958
L H 0.928
V H 0.915
R H 0.906
V H 0.684
C H 0.571
E H 0.312
N B 0.357
P G 0.177
G S 0.454
I B 0.516
I B 0.664
Q H 0.734
E H 0.939
K H 0.939
I H 0.938
A H 0.886
E H 0.836
L H 0.682
I B 0.483
K S 0.591
V B 0.279
D B 0.489
R I 0.342
T H 0.685
T H 0.720
A H 0.822
A H 0.930
R H 0.958
A H 0.947
I H 0.930
K H 0.942
R H 0.953
L H 0.936
E H 0.825
E H 0.860
Q B 0.680
G S 0.579
F B 0.362
I E 0.550
Y E 0.433
R E 0.412
Q B 0.335
E B 0.373
D B 0.461
A H 0.473
S S 0.408
N E 0.368
K H 0.216
K E 0.282
I A 0.513
K E 0.570
R E 0.635
I E 0.533
Y E 0.570
A E 0.311
T C 0.625
E H 0.669
K H 0.664
G H 0.623
K H 0.895
N H 0.906
V H 0.859
Y H 0.844
P H 0.835
I H 0.797
I H 0.581
V H 0.825
R H 0.883
E H 0.877
N H 0.888
Q H 0.930
H H 0.932
S H 0.925
N H 0.914
Q H 0.905
V H 0.891
A H 0.808
L H 0.606
Q H 0.516
G S 0.749
L B 0.508
S B 0.609
E H 0.826
V H 0.939
E H 0.931
I H 0.968
S H 0.957
Q H 0.950
L H 0.927
A H 0.948
D H 0.967
Y H 0.956
L H 0.935
V H 0.961
R H 0.956
M H 0.889
R H 0.846
K H 0.696
N H 0.396
V H 0.321
S H 0.484
E H 0.417
D H 0.480
W H 0.427
E H 0.638
F H 0.437
V H 0.301
K H 0.249
K H 0.188
G S 0.350
N B 0.278
T H 0.210
R B 0.179
N E 0.201
Y S 0.178
END