PFRMAT SS
TARGET T0165
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0165.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 175
METHOD
MODEL 1
M E 0.288
Q E 0.285
L E 0.213
F H 0.179
D S 0.387
L B 0.365
P B 0.466
L H 0.494
D H 0.755
Q H 0.665
L H 0.645
Q H 0.590
T H 0.589
Y H 0.253
K B 0.256
P H 0.183
E B 0.291
K B 0.328
T B 0.264
A B 0.384
P B 0.401
K H 0.364
D H 0.267
F H 0.340
S H 0.583
E H 0.657
F H 0.522
W H 0.402
K H 0.455
L H 0.441
S H 0.513
L H 0.681
E H 0.760
E H 0.670
L H 0.560
A H 0.540
K H 0.426
V B 0.220
Q H 0.260
A H 0.398
E H 0.286
P H 0.308
D H 0.347
L H 0.233
Q B 0.329
P H 0.197
V H 0.241
D S 0.287
Y B 0.237
P B 0.178
A B 0.237
D H 0.178
G E 0.219
V B 0.342
K B 0.355
V E 0.376
Y E 0.402
R A 0.486
L E 0.583
T A 0.430
Y B 0.397
K E 0.380
S C 0.622
F H 0.412
G B 0.424
N S 0.614
A B 0.434
R E 0.434
I E 0.413
T A 0.420
G E 0.387
W E 0.537
Y E 0.465
A E 0.424
V B 0.304
P B 0.282
D B 0.178
K C 0.140
E S 0.254
G C 0.186
P E 0.204
H B 0.422
P E 0.488
A E 0.703
I E 0.678
V E 0.692
K E 0.536
Y A 0.367
H S 0.163
G D 0.215
Y C 0.183
N I 0.158
A S 0.239
S S 0.162
Y S 0.182
D S 0.210
G H 0.286
E H 0.258
I H 0.604
H H 0.862
E H 0.874
M H 0.916
V H 0.948
N H 0.968
W H 0.947
A H 0.823
L H 0.831
H B 0.550
G T 0.550
Y B 0.434
A E 0.685
T E 0.542
F E 0.683
G E 0.652
M E 0.443
L E 0.326
V C 0.135
R G 0.171
G S 0.220
Q C 0.151
Q S 0.183
S S 0.184
S C 0.157
E S 0.159
D S 0.201
T B 0.222
S H 0.177
I H 0.194
S H 0.169
P H 0.182
H B 0.201
G H 0.274
H H 0.319
A H 0.366
L H 0.500
G H 0.560
W H 0.569
M H 0.559
T H 0.500
K H 0.300
G S 0.290
I H 0.270
L H 0.215
D E 0.195
K H 0.403
D H 0.252
T H 0.269
Y H 0.338
Y H 0.344
Y H 0.342
R H 0.514
G H 0.570
V H 0.647
Y H 0.842
L H 0.922
D H 0.928
A H 0.920
V H 0.959
R H 0.973
A H 0.962
L H 0.932
E H 0.947
V H 0.932
I H 0.790
S H 0.712
S S 0.357
F B 0.433
D I 0.187
E S 0.336
V E 0.326
D E 0.481
E I 0.486
T H 0.335
R E 0.200
I E 0.460
G E 0.542
V A 0.397
T E 0.164
G B 0.181
G H 0.191
S H 0.226
Q H 0.610
G H 0.669
G H 0.846
G H 0.929
L H 0.953
T H 0.948
I H 0.911
A H 0.857
A H 0.714
A H 0.462
A H 0.275
L B 0.190
S B 0.345
D I 0.332
I S 0.210
P A 0.364
K G 0.274
A E 0.466
A E 0.527
V E 0.547
A E 0.423
D S 0.185
Y B 0.269
P B 0.256
Y E 0.245
L H 0.147
S E 0.226
N I 0.231
F H 0.266
E H 0.407
R H 0.332
A H 0.247
I H 0.255
D H 0.260
V H 0.232
A H 0.231
L H 0.356
E H 0.472
Q H 0.413
P H 0.450
Y H 0.476
L H 0.458
E H 0.420
I H 0.429
N H 0.435
S H 0.391
F H 0.300
F S 0.184
R E 0.207
R H 0.216
N H 0.184
G H 0.209
S H 0.244
P H 0.218
E H 0.202
T B 0.261
E H 0.379
V H 0.602
Q H 0.684
A H 0.649
M H 0.718
K H 0.818
T H 0.759
L H 0.619
S H 0.573
Y H 0.562
F B 0.197
D E 0.312
I H 0.514
M H 0.716
N H 0.696
L H 0.397
A I 0.355
D H 0.579
R S 0.580
V E 0.377
K H 0.156
V B 0.342
P E 0.492
V E 0.673
L E 0.663
M E 0.609
S A 0.403
I B 0.233
G B 0.226
L H 0.289
I S 0.417
D E 0.559
K I 0.376
V S 0.266
T B 0.420
P B 0.426
P H 0.517
S H 0.767
T H 0.796
V H 0.900
F H 0.943
A H 0.966
A H 0.938
Y H 0.906
N H 0.913
H H 0.827
L H 0.761
E H 0.625
T H 0.451
K B 0.629
K S 0.593
E B 0.637
L E 0.477
K E 0.515
V E 0.497
Y E 0.396
R E 0.350
Y E 0.208
F B 0.250
G H 0.206
H S 0.237
E B 0.160
Y S 0.168
I B 0.171
P S 0.198
A S 0.157
F B 0.245
Q H 0.252
T H 0.404
E S 0.305
K B 0.275
L H 0.633
A H 0.822
F H 0.852
F H 0.799
K H 0.688
Q H 0.642
H H 0.517
L H 0.318
K H 0.338
G H 0.232
END