PFRMAT SS TARGET T0164 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 6 (1 EBGHTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0164.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 195 METHOD MODEL 1 N C 0.679 S C 0.607 T H 0.563 D H 0.798 V H 0.871 E H 0.928 E H 0.958 T H 0.974 L H 0.985 K H 0.973 R H 0.973 I H 0.959 Q H 0.934 N H 0.814 N H 0.561 D T 0.556 P T 0.577 D T 0.537 L T 0.375 E E 0.670 E E 0.883 V E 0.853 N E 0.613 L T 0.450 N T 0.421 N T 0.510 I T 0.541 M T 0.648 N T 0.609 I T 0.504 P C 0.684 V H 0.937 P H 0.976 T H 0.987 L H 0.997 K H 0.998 A H 0.997 C H 0.998 A H 0.993 E H 0.986 A H 0.969 L H 0.937 K H 0.772 T H 0.359 N T 0.659 T T 0.582 Y T 0.420 V E 0.554 K E 0.777 K E 0.916 F E 0.855 S E 0.745 I T 0.386 V T 0.649 G T 0.674 T T 0.690 R T 0.517 S C 0.516 N C 0.741 D H 0.982 P H 0.995 V H 0.996 A H 0.999 F H 0.999 A H 0.998 L H 0.999 A H 0.997 E H 0.992 M H 0.982 L H 0.957 K H 0.831 V H 0.623 N T 0.586 N T 0.605 T T 0.508 L E 0.433 K E 0.705 S E 0.919 L E 0.882 N E 0.764 V E 0.386 E T 0.500 S T 0.512 N T 0.631 F T 0.594 I T 0.443 S C 0.570 G H 0.963 S H 0.989 G H 0.996 I H 0.999 L H 1.000 A H 0.999 L H 0.999 V H 0.999 E H 0.997 A H 0.990 L H 0.970 Q H 0.814 S H 0.348 N T 0.557 T T 0.519 S E 0.366 L E 0.657 I E 0.858 E E 0.958 L E 0.917 R E 0.835 I E 0.457 D T 0.569 N T 0.670 Q T 0.807 S T 0.766 Q T 0.738 P T 0.641 L C 0.590 G C 0.772 N H 0.966 N H 0.987 V H 0.989 E H 0.996 M H 0.997 E H 0.997 I H 0.998 A H 0.997 N H 0.993 M H 0.984 L H 0.965 E H 0.878 K H 0.555 N C 0.468 T C 0.572 T C 0.466 L E 0.421 L E 0.662 K E 0.836 F E 0.716 G E 0.573 Y T 0.396 H T 0.576 F T 0.605 T T 0.549 Q T 0.550 Q T 0.471 G T 0.438 P H 0.577 R H 0.772 L H 0.798 R H 0.854 A H 0.910 S H 0.894 N H 0.898 A H 0.836 M H 0.786 M H 0.745 N H 0.531 N H 0.525 N H 0.597 D H 0.797 L H 0.907 V H 0.939 R H 0.932 K H 0.886 R H 0.773 R H 0.514 L C 0.963 END