PFRMAT SS
TARGET T0163
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0163.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 570
METHOD
MODEL 1
M C 0.891
K C 0.742
R C 0.574
H C 0.434
Y E 0.350
E E 0.584
A E 0.973
V E 0.992
V E 0.990
I E 0.917
G C 0.905
G C 0.838
G C 0.779
I H 0.965
I H 0.989
G H 0.999
S H 1.000
A H 1.000
I H 1.000
A H 0.999
Y H 0.999
Y H 0.999
L H 0.998
A H 0.993
K H 0.980
E H 0.873
N C 0.923
K C 0.868
N E 0.456
T E 0.964
A E 0.990
L E 0.994
F E 0.973
E E 0.857
S C 0.451
G C 0.610
T C 0.531
M T 0.509
G T 0.608
G T 0.562
R T 0.502
T T 0.379
T E 0.294
S E 0.314
A E 0.280
A E 0.288
A T 0.278
G E 0.289
M E 0.435
L E 0.418
G E 0.343
A T 0.373
H T 0.397
A T 0.383
E C 0.338
C T 0.392
E C 0.394
E C 0.368
R C 0.444
D H 0.682
A H 0.775
F H 0.841
F H 0.880
D H 0.912
F H 0.918
A H 0.911
M H 0.949
H H 0.945
S H 0.947
Q H 0.944
R H 0.954
L H 0.955
Y H 0.922
K H 0.924
G H 0.897
L H 0.873
G H 0.778
E H 0.764
E H 0.753
L H 0.578
Y H 0.606
A H 0.499
L H 0.358
S T 0.353
G T 0.424
V T 0.404
D C 0.395
I C 0.360
R C 0.389
Q E 0.434
H E 0.388
N T 0.378
G T 0.554
G T 0.505
M E 0.567
F E 0.810
K E 0.837
L E 0.763
A E 0.571
F C 0.573
S C 0.670
E H 0.509
E H 0.602
D H 0.734
V H 0.801
L H 0.804
Q H 0.832
L H 0.748
R H 0.776
Q H 0.787
M H 0.704
D H 0.660
D H 0.469
L C 0.406
D C 0.491
S C 0.495
V T 0.307
S E 0.385
W E 0.367
Y C 0.704
S C 0.856
K H 0.921
E H 0.917
E H 0.918
V H 0.917
L H 0.920
E H 0.877
K H 0.753
E H 0.431
P C 0.317
Y T 0.415
A T 0.439
S T 0.479
G T 0.519
D T 0.477
I T 0.380
F E 0.432
G E 0.564
A E 0.627
S E 0.692
F E 0.704
I E 0.541
Q T 0.559
D T 0.723
D T 0.626
V E 0.365
H E 0.422
V C 0.400
E C 0.720
P H 0.912
Y H 0.964
F H 0.970
V H 0.979
C H 0.993
K H 0.994
A H 0.995
Y H 0.996
V H 0.998
K H 0.996
A H 0.995
A H 0.991
K H 0.975
M H 0.930
L H 0.688
G C 0.935
A C 0.769
E E 0.799
I E 0.902
F E 0.853
E E 0.621
H T 0.563
T T 0.449
P E 0.602
V E 0.876
L E 0.909
H E 0.949
V E 0.958
E E 0.946
R E 0.909
D E 0.642
G T 0.759
E T 0.583
A E 0.798
L E 0.939
F E 0.977
I E 0.987
K E 0.983
T E 0.931
P T 0.564
S T 0.896
G T 0.772
D E 0.755
V E 0.904
W E 0.878
A E 0.877
N E 0.836
H E 0.937
V E 0.962
V E 0.967
V E 0.932
A E 0.663
S C 0.537
G C 0.543
V C 0.401
W T 0.326
S H 0.388
G H 0.508
M H 0.626
F H 0.718
F H 0.705
K H 0.707
Q H 0.712
L H 0.516
G C 0.606
L C 0.571
N C 0.580
N C 0.552
A C 0.703
F C 0.524
L C 0.470
P C 0.433
V E 0.449
K E 0.464
G E 0.426
E E 0.833
C E 0.956
L E 0.967
S E 0.953
V E 0.831
W E 0.495
N C 0.517
D C 0.498
D T 0.465
I T 0.487
P T 0.429
L C 0.405
T C 0.419
K E 0.511
T E 0.659
L E 0.663
Y T 0.437
H T 0.751
D T 0.825
H T 0.544
C E 0.794
Y E 0.935
I E 0.967
V E 0.955
P E 0.932
R E 0.661
K T 0.837
S T 0.929
G T 0.874
R E 0.627
L E 0.929
V E 0.967
V E 0.946
G E 0.781
A E 0.611
T E 0.431
M E 0.325
K C 0.330
P T 0.372
G T 0.428
D C 0.453
W T 0.458
S T 0.457
E T 0.468
T C 0.575
P C 0.581
D C 0.777
L H 0.876
G H 0.917
G H 0.934
L H 0.973
E H 0.977
S H 0.976
V H 0.972
M H 0.979
K H 0.976
K H 0.985
A H 0.971
K H 0.931
T H 0.886
M H 0.800
L H 0.434
P T 0.357
A T 0.341
I T 0.399
Q T 0.460
N T 0.400
M T 0.365
K C 0.475
V E 0.565
D E 0.747
R E 0.871
F E 0.833
W E 0.778
A E 0.604
G E 0.543
L E 0.596
R E 0.563
P E 0.423
G C 0.489
T T 0.681
K T 0.761
D T 0.796
G T 0.682
K C 0.465
P E 0.435
Y E 0.635
I E 0.696
G E 0.471
R E 0.358
H T 0.493
P T 0.683
E T 0.769
D T 0.768
S T 0.689
R T 0.530
I E 0.712
L E 0.869
F E 0.903
A E 0.814
A E 0.485
G T 0.433
H T 0.424
F T 0.472
R T 0.609
N T 0.512
G T 0.340
I H 0.450
L H 0.547
L H 0.686
A H 0.805
P H 0.950
A H 0.980
T H 0.992
G H 0.997
A H 0.999
L H 0.998
I H 0.999
S H 0.999
D H 0.998
L H 0.994
I H 0.981
M H 0.934
N H 0.401
K C 0.727
E C 0.696
V C 0.594
N C 0.562
Q T 0.316
D T 0.371
W T 0.346
L T 0.320
H T 0.373
A T 0.400
F C 0.461
R T 0.445
I T 0.416
D T 0.470
R T 0.425
K C 0.473
E C 0.377
A T 0.359
V T 0.324
Q C 0.406
I C 0.921
END