PFRMAT SS TARGET T0163 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 6 (1 EBGHTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0163.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 570 METHOD MODEL 1 M C 0.891 K C 0.742 R C 0.574 H C 0.434 Y E 0.350 E E 0.584 A E 0.973 V E 0.992 V E 0.990 I E 0.917 G C 0.905 G C 0.838 G C 0.779 I H 0.965 I H 0.989 G H 0.999 S H 1.000 A H 1.000 I H 1.000 A H 0.999 Y H 0.999 Y H 0.999 L H 0.998 A H 0.993 K H 0.980 E H 0.873 N C 0.923 K C 0.868 N E 0.456 T E 0.964 A E 0.990 L E 0.994 F E 0.973 E E 0.857 S C 0.451 G C 0.610 T C 0.531 M T 0.509 G T 0.608 G T 0.562 R T 0.502 T T 0.379 T E 0.294 S E 0.314 A E 0.280 A E 0.288 A T 0.278 G E 0.289 M E 0.435 L E 0.418 G E 0.343 A T 0.373 H T 0.397 A T 0.383 E C 0.338 C T 0.392 E C 0.394 E C 0.368 R C 0.444 D H 0.682 A H 0.775 F H 0.841 F H 0.880 D H 0.912 F H 0.918 A H 0.911 M H 0.949 H H 0.945 S H 0.947 Q H 0.944 R H 0.954 L H 0.955 Y H 0.922 K H 0.924 G H 0.897 L H 0.873 G H 0.778 E H 0.764 E H 0.753 L H 0.578 Y H 0.606 A H 0.499 L H 0.358 S T 0.353 G T 0.424 V T 0.404 D C 0.395 I C 0.360 R C 0.389 Q E 0.434 H E 0.388 N T 0.378 G T 0.554 G T 0.505 M E 0.567 F E 0.810 K E 0.837 L E 0.763 A E 0.571 F C 0.573 S C 0.670 E H 0.509 E H 0.602 D H 0.734 V H 0.801 L H 0.804 Q H 0.832 L H 0.748 R H 0.776 Q H 0.787 M H 0.704 D H 0.660 D H 0.469 L C 0.406 D C 0.491 S C 0.495 V T 0.307 S E 0.385 W E 0.367 Y C 0.704 S C 0.856 K H 0.921 E H 0.917 E H 0.918 V H 0.917 L H 0.920 E H 0.877 K H 0.753 E H 0.431 P C 0.317 Y T 0.415 A T 0.439 S T 0.479 G T 0.519 D T 0.477 I T 0.380 F E 0.432 G E 0.564 A E 0.627 S E 0.692 F E 0.704 I E 0.541 Q T 0.559 D T 0.723 D T 0.626 V E 0.365 H E 0.422 V C 0.400 E C 0.720 P H 0.912 Y H 0.964 F H 0.970 V H 0.979 C H 0.993 K H 0.994 A H 0.995 Y H 0.996 V H 0.998 K H 0.996 A H 0.995 A H 0.991 K H 0.975 M H 0.930 L H 0.688 G C 0.935 A C 0.769 E E 0.799 I E 0.902 F E 0.853 E E 0.621 H T 0.563 T T 0.449 P E 0.602 V E 0.876 L E 0.909 H E 0.949 V E 0.958 E E 0.946 R E 0.909 D E 0.642 G T 0.759 E T 0.583 A E 0.798 L E 0.939 F E 0.977 I E 0.987 K E 0.983 T E 0.931 P T 0.564 S T 0.896 G T 0.772 D E 0.755 V E 0.904 W E 0.878 A E 0.877 N E 0.836 H E 0.937 V E 0.962 V E 0.967 V E 0.932 A E 0.663 S C 0.537 G C 0.543 V C 0.401 W T 0.326 S H 0.388 G H 0.508 M H 0.626 F H 0.718 F H 0.705 K H 0.707 Q H 0.712 L H 0.516 G C 0.606 L C 0.571 N C 0.580 N C 0.552 A C 0.703 F C 0.524 L C 0.470 P C 0.433 V E 0.449 K E 0.464 G E 0.426 E E 0.833 C E 0.956 L E 0.967 S E 0.953 V E 0.831 W E 0.495 N C 0.517 D C 0.498 D T 0.465 I T 0.487 P T 0.429 L C 0.405 T C 0.419 K E 0.511 T E 0.659 L E 0.663 Y T 0.437 H T 0.751 D T 0.825 H T 0.544 C E 0.794 Y E 0.935 I E 0.967 V E 0.955 P E 0.932 R E 0.661 K T 0.837 S T 0.929 G T 0.874 R E 0.627 L E 0.929 V E 0.967 V E 0.946 G E 0.781 A E 0.611 T E 0.431 M E 0.325 K C 0.330 P T 0.372 G T 0.428 D C 0.453 W T 0.458 S T 0.457 E T 0.468 T C 0.575 P C 0.581 D C 0.777 L H 0.876 G H 0.917 G H 0.934 L H 0.973 E H 0.977 S H 0.976 V H 0.972 M H 0.979 K H 0.976 K H 0.985 A H 0.971 K H 0.931 T H 0.886 M H 0.800 L H 0.434 P T 0.357 A T 0.341 I T 0.399 Q T 0.460 N T 0.400 M T 0.365 K C 0.475 V E 0.565 D E 0.747 R E 0.871 F E 0.833 W E 0.778 A E 0.604 G E 0.543 L E 0.596 R E 0.563 P E 0.423 G C 0.489 T T 0.681 K T 0.761 D T 0.796 G T 0.682 K C 0.465 P E 0.435 Y E 0.635 I E 0.696 G E 0.471 R E 0.358 H T 0.493 P T 0.683 E T 0.769 D T 0.768 S T 0.689 R T 0.530 I E 0.712 L E 0.869 F E 0.903 A E 0.814 A E 0.485 G T 0.433 H T 0.424 F T 0.472 R T 0.609 N T 0.512 G T 0.340 I H 0.450 L H 0.547 L H 0.686 A H 0.805 P H 0.950 A H 0.980 T H 0.992 G H 0.997 A H 0.999 L H 0.998 I H 0.999 S H 0.999 D H 0.998 L H 0.994 I H 0.981 M H 0.934 N H 0.401 K C 0.727 E C 0.696 V C 0.594 N C 0.562 Q T 0.316 D T 0.371 W T 0.346 L T 0.320 H T 0.373 A T 0.400 F C 0.461 R T 0.445 I T 0.416 D T 0.470 R T 0.425 K C 0.473 E C 0.377 A T 0.359 V T 0.324 Q C 0.406 I C 0.921 END