PFRMAT SS
TARGET T0163
AUTHOR 4069-6308-1312
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0163.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 570
METHOD
MODEL 1
M C 0.998
K C 0.873
R C 0.400
H C 0.518
Y C 0.812
E S 0.539
A E 0.986
V E 0.998
V E 0.997
I E 0.959
G C 0.492
G C 0.546
G S 0.315
I H 0.830
I H 0.957
G H 0.980
S H 0.991
A H 0.995
I H 0.997
A H 0.997
Y H 0.997
Y H 0.996
L H 0.995
A H 0.982
K H 0.852
E T 0.817
N T 0.929
K C 0.850
N C 0.375
T E 0.958
A E 0.988
L E 0.992
F E 0.971
E E 0.694
S C 0.415
G S 0.426
T C 0.413
M C 0.451
G C 0.396
G T 0.295
R S 0.227
T C 0.270
T C 0.283
S C 0.254
A C 0.236
A C 0.254
A T 0.265
G T 0.251
M E 0.365
L E 0.434
G C 0.393
A T 0.293
H T 0.316
A C 0.300
E C 0.408
C C 0.470
E C 0.461
E C 0.369
R C 0.438
D H 0.685
A H 0.774
F H 0.844
F H 0.890
D H 0.892
F H 0.895
A H 0.922
M H 0.929
H H 0.911
S H 0.890
Q H 0.905
R H 0.911
L H 0.906
Y H 0.907
K H 0.909
G H 0.898
L H 0.877
G H 0.855
E H 0.784
E H 0.748
L H 0.643
Y H 0.625
A H 0.569
L H 0.448
S T 0.427
G C 0.304
V C 0.378
D C 0.354
I C 0.331
R E 0.366
Q E 0.507
H E 0.491
N E 0.410
G T 0.290
G T 0.287
M E 0.469
F E 0.786
K E 0.836
L E 0.788
A E 0.550
F C 0.464
S C 0.600
E H 0.576
E H 0.683
D H 0.733
V H 0.839
L H 0.856
Q H 0.855
L H 0.854
R H 0.858
Q H 0.809
M H 0.752
D H 0.629
D T 0.351
L C 0.347
D C 0.576
S C 0.484
V C 0.357
S E 0.362
W E 0.420
Y C 0.556
S C 0.865
K H 0.870
E H 0.840
E H 0.788
V H 0.902
L H 0.820
E H 0.649
K H 0.510
E C 0.384
P C 0.397
Y C 0.343
A C 0.448
S C 0.505
G T 0.303
D T 0.309
I C 0.297
F E 0.373
G E 0.512
A E 0.639
S E 0.712
F E 0.660
I C 0.411
Q T 0.345
D T 0.529
D T 0.278
V E 0.257
H E 0.460
V E 0.417
E C 0.728
P H 0.824
Y H 0.921
F H 0.935
V H 0.971
C H 0.985
K H 0.988
A H 0.992
Y H 0.994
V H 0.994
K H 0.993
A H 0.993
A H 0.993
K H 0.978
M H 0.835
L T 0.901
G T 0.980
A C 0.975
E E 0.644
I E 0.802
F E 0.806
E E 0.558
H S 0.421
T S 0.444
P E 0.505
V E 0.770
L E 0.879
H E 0.899
V E 0.905
E E 0.876
R E 0.707
D T 0.362
G T 0.633
E S 0.342
A E 0.809
L E 0.963
F E 0.983
I E 0.972
K E 0.953
T E 0.740
P T 0.797
S T 0.779
G S 0.527
D E 0.742
V E 0.954
W E 0.938
A E 0.743
N E 0.600
H E 0.973
V E 0.993
V E 0.994
V E 0.972
A E 0.606
S C 0.357
G C 0.455
V C 0.276
W H 0.289
S H 0.573
G H 0.657
M H 0.670
F H 0.722
F H 0.717
K H 0.667
Q H 0.665
L H 0.353
G T 0.562
L C 0.520
N C 0.516
N C 0.541
A C 0.629
F C 0.523
L C 0.450
P C 0.474
V E 0.385
K E 0.355
G E 0.503
E E 0.806
C E 0.959
L E 0.975
S E 0.961
V E 0.877
W E 0.614
N C 0.529
D C 0.524
D C 0.394
I C 0.513
P C 0.491
L C 0.437
T C 0.407
K E 0.537
T E 0.622
L E 0.607
Y C 0.495
H T 0.513
D T 0.619
H C 0.269
C E 0.663
Y E 0.902
I E 0.947
V E 0.952
P E 0.870
R E 0.500
K T 0.649
S T 0.758
G T 0.512
R E 0.478
L E 0.914
V E 0.964
V E 0.926
G E 0.734
A E 0.430
T C 0.282
M C 0.290
K C 0.285
P C 0.365
G C 0.391
D C 0.388
W C 0.410
S C 0.499
E C 0.316
T C 0.441
P C 0.613
D C 0.845
L H 0.894
G H 0.906
G H 0.929
L H 0.977
E H 0.976
S H 0.974
V H 0.977
M H 0.983
K H 0.975
K H 0.967
A H 0.960
K H 0.937
T H 0.891
M H 0.853
L H 0.569
P H 0.412
A T 0.347
I H 0.296
Q T 0.302
N T 0.301
M C 0.372
K C 0.397
V E 0.336
D E 0.480
R E 0.540
F E 0.533
W E 0.485
A E 0.454
G E 0.412
L E 0.463
R E 0.466
P C 0.544
G C 0.361
T C 0.629
K T 0.564
D T 0.661
G S 0.407
K C 0.576
P C 0.398
Y E 0.558
I E 0.582
G E 0.369
R C 0.362
H C 0.609
P T 0.725
E T 0.836
D C 0.644
S T 0.617
R T 0.622
I E 0.730
L E 0.951
F E 0.968
A E 0.926
A E 0.770
G E 0.425
H C 0.301
F C 0.301
R T 0.265
N T 0.294
G H 0.303
I H 0.479
L H 0.499
L H 0.592
A H 0.635
P H 0.952
A H 0.974
T H 0.980
G H 0.989
A H 0.991
L H 0.994
I H 0.995
S H 0.995
D H 0.990
L H 0.982
I H 0.965
M H 0.725
N T 0.611
K C 0.530
E C 0.694
V C 0.666
N C 0.555
Q C 0.380
D C 0.314
W G 0.350
L G 0.299
H C 0.367
A C 0.343
F C 0.472
R C 0.724
I G 0.352
D G 0.409
R G 0.451
K C 0.398
E C 0.661
A C 0.425
V C 0.417
Q C 0.789
I C 0.999
END