PFRMAT SS TARGET T0163 AUTHOR 4069-6308-1312 METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 7 (1 EBGHSTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0163.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 570 METHOD MODEL 1 M C 0.998 K C 0.873 R C 0.400 H C 0.518 Y C 0.812 E S 0.539 A E 0.986 V E 0.998 V E 0.997 I E 0.959 G C 0.492 G C 0.546 G S 0.315 I H 0.830 I H 0.957 G H 0.980 S H 0.991 A H 0.995 I H 0.997 A H 0.997 Y H 0.997 Y H 0.996 L H 0.995 A H 0.982 K H 0.852 E T 0.817 N T 0.929 K C 0.850 N C 0.375 T E 0.958 A E 0.988 L E 0.992 F E 0.971 E E 0.694 S C 0.415 G S 0.426 T C 0.413 M C 0.451 G C 0.396 G T 0.295 R S 0.227 T C 0.270 T C 0.283 S C 0.254 A C 0.236 A C 0.254 A T 0.265 G T 0.251 M E 0.365 L E 0.434 G C 0.393 A T 0.293 H T 0.316 A C 0.300 E C 0.408 C C 0.470 E C 0.461 E C 0.369 R C 0.438 D H 0.685 A H 0.774 F H 0.844 F H 0.890 D H 0.892 F H 0.895 A H 0.922 M H 0.929 H H 0.911 S H 0.890 Q H 0.905 R H 0.911 L H 0.906 Y H 0.907 K H 0.909 G H 0.898 L H 0.877 G H 0.855 E H 0.784 E H 0.748 L H 0.643 Y H 0.625 A H 0.569 L H 0.448 S T 0.427 G C 0.304 V C 0.378 D C 0.354 I C 0.331 R E 0.366 Q E 0.507 H E 0.491 N E 0.410 G T 0.290 G T 0.287 M E 0.469 F E 0.786 K E 0.836 L E 0.788 A E 0.550 F C 0.464 S C 0.600 E H 0.576 E H 0.683 D H 0.733 V H 0.839 L H 0.856 Q H 0.855 L H 0.854 R H 0.858 Q H 0.809 M H 0.752 D H 0.629 D T 0.351 L C 0.347 D C 0.576 S C 0.484 V C 0.357 S E 0.362 W E 0.420 Y C 0.556 S C 0.865 K H 0.870 E H 0.840 E H 0.788 V H 0.902 L H 0.820 E H 0.649 K H 0.510 E C 0.384 P C 0.397 Y C 0.343 A C 0.448 S C 0.505 G T 0.303 D T 0.309 I C 0.297 F E 0.373 G E 0.512 A E 0.639 S E 0.712 F E 0.660 I C 0.411 Q T 0.345 D T 0.529 D T 0.278 V E 0.257 H E 0.460 V E 0.417 E C 0.728 P H 0.824 Y H 0.921 F H 0.935 V H 0.971 C H 0.985 K H 0.988 A H 0.992 Y H 0.994 V H 0.994 K H 0.993 A H 0.993 A H 0.993 K H 0.978 M H 0.835 L T 0.901 G T 0.980 A C 0.975 E E 0.644 I E 0.802 F E 0.806 E E 0.558 H S 0.421 T S 0.444 P E 0.505 V E 0.770 L E 0.879 H E 0.899 V E 0.905 E E 0.876 R E 0.707 D T 0.362 G T 0.633 E S 0.342 A E 0.809 L E 0.963 F E 0.983 I E 0.972 K E 0.953 T E 0.740 P T 0.797 S T 0.779 G S 0.527 D E 0.742 V E 0.954 W E 0.938 A E 0.743 N E 0.600 H E 0.973 V E 0.993 V E 0.994 V E 0.972 A E 0.606 S C 0.357 G C 0.455 V C 0.276 W H 0.289 S H 0.573 G H 0.657 M H 0.670 F H 0.722 F H 0.717 K H 0.667 Q H 0.665 L H 0.353 G T 0.562 L C 0.520 N C 0.516 N C 0.541 A C 0.629 F C 0.523 L C 0.450 P C 0.474 V E 0.385 K E 0.355 G E 0.503 E E 0.806 C E 0.959 L E 0.975 S E 0.961 V E 0.877 W E 0.614 N C 0.529 D C 0.524 D C 0.394 I C 0.513 P C 0.491 L C 0.437 T C 0.407 K E 0.537 T E 0.622 L E 0.607 Y C 0.495 H T 0.513 D T 0.619 H C 0.269 C E 0.663 Y E 0.902 I E 0.947 V E 0.952 P E 0.870 R E 0.500 K T 0.649 S T 0.758 G T 0.512 R E 0.478 L E 0.914 V E 0.964 V E 0.926 G E 0.734 A E 0.430 T C 0.282 M C 0.290 K C 0.285 P C 0.365 G C 0.391 D C 0.388 W C 0.410 S C 0.499 E C 0.316 T C 0.441 P C 0.613 D C 0.845 L H 0.894 G H 0.906 G H 0.929 L H 0.977 E H 0.976 S H 0.974 V H 0.977 M H 0.983 K H 0.975 K H 0.967 A H 0.960 K H 0.937 T H 0.891 M H 0.853 L H 0.569 P H 0.412 A T 0.347 I H 0.296 Q T 0.302 N T 0.301 M C 0.372 K C 0.397 V E 0.336 D E 0.480 R E 0.540 F E 0.533 W E 0.485 A E 0.454 G E 0.412 L E 0.463 R E 0.466 P C 0.544 G C 0.361 T C 0.629 K T 0.564 D T 0.661 G S 0.407 K C 0.576 P C 0.398 Y E 0.558 I E 0.582 G E 0.369 R C 0.362 H C 0.609 P T 0.725 E T 0.836 D C 0.644 S T 0.617 R T 0.622 I E 0.730 L E 0.951 F E 0.968 A E 0.926 A E 0.770 G E 0.425 H C 0.301 F C 0.301 R T 0.265 N T 0.294 G H 0.303 I H 0.479 L H 0.499 L H 0.592 A H 0.635 P H 0.952 A H 0.974 T H 0.980 G H 0.989 A H 0.991 L H 0.994 I H 0.995 S H 0.995 D H 0.990 L H 0.982 I H 0.965 M H 0.725 N T 0.611 K C 0.530 E C 0.694 V C 0.666 N C 0.555 Q C 0.380 D C 0.314 W G 0.350 L G 0.299 H C 0.367 A C 0.343 F C 0.472 R C 0.724 I G 0.352 D G 0.409 R G 0.451 K C 0.398 E C 0.661 A C 0.425 V C 0.417 Q C 0.789 I C 0.999 END