PFRMAT SS TARGET T0163 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 11 (1 ABCDEFGHIST ) METHOD The input amino acid frequencies were determined from METHOD alignment T0163.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 570 METHOD MODEL 1 M B 0.179 K E 0.218 R E 0.282 H A 0.249 Y E 0.430 E G 0.284 A E 0.774 V E 0.867 V E 0.554 I G 0.204 G E 0.205 G S 0.561 G D 0.390 I H 0.650 I H 0.668 G H 0.766 S H 0.872 A H 0.943 I H 0.934 A H 0.919 Y H 0.929 Y H 0.943 L H 0.904 A H 0.801 K H 0.771 E B 0.626 N T 0.504 K B 0.591 N E 0.448 T E 0.624 A E 0.812 L E 0.535 F E 0.345 E E 0.335 S S 0.142 G D 0.148 T B 0.184 M B 0.152 G D 0.205 G H 0.130 R S 0.270 T E 0.203 T H 0.237 S H 0.169 A H 0.233 A H 0.173 A B 0.172 G S 0.153 M E 0.170 L B 0.248 G B 0.260 A H 0.301 H S 0.296 A E 0.178 E H 0.156 C B 0.205 E B 0.214 E H 0.205 R H 0.201 D H 0.496 A H 0.691 F H 0.735 F H 0.811 D H 0.847 F H 0.800 A H 0.817 M H 0.874 H H 0.893 S H 0.858 Q H 0.877 R H 0.905 L H 0.849 Y H 0.800 K H 0.822 G H 0.830 L H 0.729 G H 0.668 E H 0.725 E H 0.620 L H 0.561 Y H 0.465 A H 0.397 L H 0.330 S B 0.248 G S 0.257 V B 0.236 D E 0.179 I E 0.213 R E 0.211 Q E 0.277 H B 0.245 N H 0.156 G B 0.237 G S 0.408 M E 0.291 F E 0.458 K E 0.470 L E 0.360 A E 0.297 F B 0.244 S B 0.399 E H 0.454 E H 0.607 D H 0.585 V H 0.729 L H 0.769 Q H 0.763 L H 0.697 R H 0.652 Q H 0.585 M H 0.420 D H 0.264 D H 0.234 L S 0.184 D B 0.277 S E 0.225 V E 0.322 S E 0.326 W E 0.264 Y B 0.470 S B 0.622 K H 0.636 E H 0.875 E H 0.703 V H 0.769 L H 0.572 E H 0.559 K H 0.257 E E 0.197 P H 0.231 Y H 0.191 A H 0.184 S B 0.188 G H 0.193 D S 0.189 I S 0.168 F E 0.165 G E 0.155 A E 0.232 S E 0.291 F E 0.263 I B 0.301 Q H 0.221 D H 0.157 D S 0.189 V S 0.231 H E 0.310 V B 0.253 E E 0.341 P H 0.461 Y H 0.801 F H 0.861 V H 0.865 C H 0.915 K H 0.937 A H 0.963 Y H 0.932 V H 0.935 K H 0.954 A H 0.957 A H 0.945 K H 0.823 M H 0.883 L B 0.657 G T 0.595 A B 0.551 E E 0.665 I A 0.493 F E 0.453 E E 0.237 H S 0.492 T B 0.475 P B 0.426 V A 0.616 L F 0.554 H E 0.395 V E 0.411 E E 0.412 R A 0.268 D D 0.498 G D 0.364 E S 0.258 A E 0.382 L E 0.548 F E 0.539 I E 0.606 K E 0.428 T C 0.579 P H 0.395 S B 0.330 G S 0.388 D E 0.404 V E 0.462 W E 0.316 A E 0.329 N G 0.472 H E 0.676 V E 0.675 V E 0.637 V E 0.377 A S 0.323 S B 0.271 G D 0.218 V H 0.244 W S 0.236 S H 0.393 G H 0.619 M H 0.718 F H 0.667 F H 0.635 K H 0.604 Q H 0.526 L B 0.459 G S 0.491 L B 0.277 N E 0.158 N B 0.319 A E 0.264 F E 0.282 L B 0.396 P E 0.283 V E 0.243 K G 0.149 G E 0.227 E E 0.559 C E 0.594 L E 0.627 S E 0.461 V E 0.324 W B 0.339 N B 0.316 D B 0.241 D B 0.156 I B 0.183 P E 0.180 L B 0.226 T B 0.256 K E 0.281 T E 0.320 L B 0.333 Y C 0.244 H H 0.278 D D 0.180 H S 0.384 C E 0.383 Y E 0.518 I E 0.471 V E 0.424 P B 0.504 R B 0.210 K H 0.242 S B 0.317 G S 0.620 R B 0.335 L E 0.580 V E 0.442 V E 0.269 G C 0.209 A E 0.198 T B 0.228 M E 0.190 K B 0.201 P E 0.143 G B 0.191 D S 0.146 W S 0.191 S E 0.212 E I 0.201 T B 0.261 P B 0.388 D B 0.491 L H 0.650 G H 0.854 G H 0.833 L H 0.901 E H 0.920 S H 0.943 V H 0.905 M H 0.919 K H 0.931 K H 0.896 A H 0.799 K H 0.707 T H 0.789 M H 0.325 L A 0.213 P H 0.455 A H 0.303 I S 0.219 Q H 0.320 N S 0.286 M B 0.285 K H 0.239 V A 0.322 D H 0.345 R H 0.227 F H 0.235 W H 0.205 A B 0.220 G D 0.201 L E 0.261 R B 0.388 P E 0.275 G E 0.244 T C 0.433 K H 0.280 D B 0.276 G S 0.515 K B 0.472 P E 0.362 Y E 0.307 I E 0.138 G B 0.191 R B 0.178 H B 0.312 P I 0.325 E S 0.508 D E 0.339 S G 0.388 R S 0.445 I E 0.613 L E 0.652 F E 0.479 A A 0.359 A B 0.195 G D 0.175 H B 0.146 F D 0.152 R S 0.135 N S 0.180 G H 0.185 I H 0.472 L H 0.661 L H 0.483 A H 0.674 P H 0.808 A H 0.868 T H 0.872 G H 0.924 A H 0.972 L H 0.976 I H 0.951 S H 0.932 D H 0.951 L H 0.908 I H 0.705 M H 0.312 N B 0.329 K S 0.415 E B 0.353 V B 0.313 N B 0.264 Q E 0.210 D H 0.270 W H 0.191 L I 0.237 H B 0.231 A H 0.220 F B 0.321 R E 0.425 I I 0.351 D H 0.350 R H 0.221 K S 0.243 E B 0.361 A H 0.325 V S 0.263 Q E 0.255 I E 0.300 END