PFRMAT SS
TARGET T0162
AUTHOR 4069-6308-1312
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0162.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 21
METHOD
MODEL 1
M C 0.968
A C 0.630
D C 0.460
F H 0.357
E H 0.345
D C 0.333
R H 0.283
V C 0.379
S C 0.627
D H 0.860
E H 0.968
E H 0.966
K H 0.986
V H 0.987
R H 0.985
I H 0.989
A H 0.993
A H 0.991
K H 0.993
F H 0.994
I H 0.985
T H 0.868
H H 0.615
A H 0.324
P C 0.747
P T 0.389
G H 0.520
E H 0.831
F H 0.927
N H 0.950
E H 0.933
V H 0.947
F H 0.959
N H 0.963
D H 0.968
V H 0.989
R H 0.985
L H 0.965
L H 0.919
L H 0.803
N H 0.452
N C 0.371
D H 0.688
N H 0.741
L H 0.758
L H 0.796
R H 0.811
E H 0.811
G H 0.788
A H 0.820
A H 0.924
H H 0.943
A H 0.951
F H 0.955
A H 0.931
Q H 0.893
Y H 0.807
N H 0.448
M T 0.610
D T 0.797
Q C 0.337
F C 0.552
T E 0.593
P E 0.809
V E 0.849
K E 0.881
I E 0.759
E E 0.392
G T 0.400
Y T 0.355
D T 0.393
D S 0.614
Q C 0.418
V E 0.929
L E 0.974
I E 0.960
T E 0.715
E E 0.452
H T 0.271
G S 0.332
D C 0.458
L T 0.430
G T 0.684
N T 0.475
G C 0.449
R E 0.681
F E 0.800
L E 0.763
D C 0.602
P T 0.702
R T 0.753
N C 0.331
K C 0.438
I E 0.715
S E 0.910
F E 0.936
K E 0.910
F E 0.775
D E 0.579
H E 0.631
L E 0.541
R E 0.518
K E 0.337
E H 0.313
A H 0.337
S T 0.294
D C 0.329
P C 0.400
Q C 0.586
P C 0.568
E C 0.426
D C 0.414
T C 0.404
E H 0.333
S H 0.440
A H 0.568
L H 0.770
K H 0.875
Q H 0.896
W H 0.927
R H 0.973
D H 0.984
A H 0.988
C H 0.991
D H 0.995
S H 0.994
A H 0.991
L H 0.992
R H 0.993
A H 0.988
Y H 0.978
V H 0.963
K H 0.907
D H 0.737
H H 0.490
Y C 0.459
P T 0.356
N T 0.713
G T 0.347
F C 0.381
C E 0.654
T E 0.711
V E 0.793
Y E 0.884
G E 0.831
K E 0.817
S E 0.736
I E 0.367
D T 0.495
G T 0.409
Q C 0.382
Q E 0.773
T E 0.960
I E 0.983
I E 0.989
A E 0.988
C E 0.970
I E 0.961
E E 0.933
S E 0.711
H E 0.486
Q E 0.371
F C 0.424
Q C 0.787
P T 0.343
K T 0.476
N G 0.341
F C 0.270
W T 0.412
N T 0.535
G S 0.425
R C 0.383
W E 0.684
R E 0.814
S E 0.883
E E 0.926
W E 0.957
K E 0.945
F E 0.928
T E 0.858
I E 0.683
T C 0.456
P T 0.682
P T 0.718
T C 0.477
A E 0.437
Q E 0.763
V E 0.858
A E 0.871
A E 0.938
V E 0.973
L E 0.984
K E 0.989
I E 0.971
Q E 0.945
V E 0.948
H E 0.879
Y E 0.860
Y E 0.650
E T 0.383
D S 0.443
G S 0.784
N C 0.521
V E 0.770
Q E 0.894
L E 0.894
V E 0.863
S E 0.694
H E 0.471
K E 0.397
D E 0.471
I E 0.470
Q E 0.351
D E 0.394
S E 0.465
V E 0.633
Q E 0.743
V E 0.496
S C 0.412
S C 0.409
D C 0.320
V H 0.421
Q H 0.535
T H 0.754
A H 0.945
K H 0.981
E H 0.988
F H 0.994
I H 0.996
K H 0.994
I H 0.989
I H 0.988
E H 0.977
N H 0.921
A H 0.909
E H 0.923
N H 0.944
E H 0.960
Y H 0.970
Q H 0.977
T H 0.973
A H 0.970
I H 0.954
S H 0.898
E H 0.783
N H 0.575
Y H 0.343
Q C 0.215
T C 0.275
M C 0.405
S C 0.502
D H 0.397
T H 0.548
T H 0.559
F H 0.528
K H 0.624
A H 0.541
L H 0.417
R G 0.567
R G 0.448
Q T 0.346
L S 0.669
P C 0.682
V C 0.453
T E 0.444
R E 0.453
T E 0.484
K E 0.577
I E 0.533
D C 0.648
W G 0.296
N G 0.382
K G 0.396
I E 0.329
L E 0.592
S E 0.816
Y E 0.778
K E 0.798
I E 0.608
G C 0.408
K S 0.228
E H 0.245
M H 0.227
Q C 0.283
N C 0.651
A C 0.998
END