PFRMAT SS
TARGET T0162
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0162.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 21
METHOD
MODEL 1
M H 0.192
A H 0.266
D E 0.246
F H 0.352
E H 0.403
D H 0.331
R H 0.298
V B 0.240
S B 0.567
D H 0.721
E H 0.865
E H 0.893
K H 0.914
V H 0.949
R H 0.958
I H 0.951
A H 0.873
A H 0.877
K H 0.885
F H 0.800
I H 0.561
T H 0.382
H S 0.539
A C 0.326
P C 0.352
P H 0.344
G S 0.622
E H 0.484
F H 0.703
N H 0.776
E H 0.787
V H 0.802
F H 0.756
N H 0.785
D H 0.807
V H 0.783
R H 0.859
L H 0.844
L H 0.591
L H 0.393
N H 0.460
N H 0.228
D H 0.607
N H 0.834
L H 0.858
L H 0.829
R H 0.842
E H 0.698
G H 0.736
A H 0.797
A H 0.900
H H 0.934
A H 0.935
F H 0.879
A H 0.858
Q H 0.829
Y H 0.535
N H 0.375
M H 0.545
D H 0.244
Q E 0.235
F A 0.258
T B 0.440
P E 0.473
V E 0.536
K E 0.434
I B 0.274
E D 0.212
G S 0.213
Y H 0.210
D S 0.174
D B 0.230
Q E 0.543
V E 0.656
L E 0.671
I E 0.468
T C 0.459
E H 0.250
H B 0.234
G S 0.271
D H 0.162
L A 0.184
G D 0.410
N D 0.568
G S 0.334
R E 0.372
F E 0.444
L B 0.372
D E 0.526
P I 0.473
R G 0.269
N B 0.245
K I 0.175
I E 0.396
S E 0.358
F E 0.556
K E 0.471
F E 0.375
D H 0.249
H H 0.342
L H 0.562
R H 0.426
K H 0.475
E H 0.308
A H 0.254
S H 0.233
D S 0.254
P B 0.287
Q B 0.351
P E 0.182
E S 0.207
D H 0.182
T H 0.233
E H 0.414
S H 0.397
A H 0.569
L H 0.697
K H 0.813
Q H 0.814
W H 0.876
R H 0.926
D H 0.935
A H 0.944
C H 0.911
D H 0.935
S H 0.949
A H 0.946
L H 0.884
R H 0.892
A H 0.888
Y H 0.797
V H 0.612
K H 0.650
D H 0.586
H H 0.305
Y A 0.284
P H 0.337
N B 0.220
G S 0.307
F E 0.344
C E 0.328
T E 0.466
V E 0.485
Y E 0.394
G E 0.351
K B 0.280
S B 0.381
I H 0.193
D D 0.214
G S 0.239
Q E 0.269
Q E 0.527
T E 0.560
I E 0.697
I E 0.698
A E 0.740
C E 0.598
I E 0.462
E E 0.257
S E 0.236
H S 0.182
Q E 0.275
F E 0.255
Q E 0.385
P I 0.276
K S 0.309
N E 0.239
F E 0.246
W F 0.193
N D 0.305
G S 0.384
R B 0.436
W A 0.351
R E 0.270
S E 0.445
E E 0.409
W E 0.570
K E 0.472
F E 0.547
T E 0.473
I E 0.265
T C 0.273
P H 0.231
P S 0.246
T E 0.238
A I 0.258
Q A 0.323
V A 0.394
A F 0.159
A C 0.325
V E 0.599
L E 0.602
K E 0.610
I E 0.531
Q E 0.499
V E 0.528
H E 0.433
Y E 0.376
Y E 0.207
E E 0.122
D D 0.156
G S 0.250
N E 0.217
V E 0.480
Q E 0.550
L E 0.506
V A 0.261
S B 0.279
H S 0.211
K B 0.227
D B 0.261
I H 0.240
Q H 0.229
D H 0.233
S E 0.336
V E 0.375
Q E 0.373
V E 0.239
S H 0.260
S H 0.234
D H 0.588
V H 0.748
Q H 0.700
T H 0.777
A H 0.876
K H 0.952
E H 0.962
F H 0.942
I H 0.961
K H 0.971
I H 0.971
I H 0.934
E H 0.932
N H 0.898
A H 0.861
E H 0.849
N H 0.871
E H 0.897
Y H 0.940
Q H 0.948
T H 0.950
A H 0.938
I H 0.872
S H 0.834
E H 0.698
N H 0.568
Y H 0.439
Q H 0.643
T S 0.336
M B 0.302
S B 0.502
D H 0.632
T H 0.626
T H 0.711
F H 0.803
K H 0.809
A H 0.824
L H 0.697
R H 0.493
R H 0.555
Q S 0.379
L B 0.476
P E 0.317
V E 0.322
T E 0.248
R E 0.188
T B 0.302
K E 0.389
I B 0.342
D A 0.403
W I 0.517
N H 0.420
K S 0.300
I A 0.224
L H 0.268
S S 0.268
Y E 0.460
K E 0.419
I H 0.280
G H 0.235
K H 0.351
E H 0.360
M H 0.313
Q H 0.230
N S 0.271
A B 0.162
END