a2m2html output for file tmp.a2m

Citations (SAM, SAM-T99, HMMs)

R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.

Sequence numbers correspond to the following labels:

- T0161 HI1480, H. influenzae
- gi|16273384|ref|NP_439631.1|_1:156 (NC_000907) H. influenzae predicted coding region HI1480 [Haemophilus influenzae Rd]
- gi|1175817 sp|P44209|YE80_HAEIN Hypothetical protein HI1480
- gi|1074794|pir||C64031 hypothetical protein HI1480 - Haemophilus influenzae (strain Rd KW20)
- gi|1574321|gb|AAC23130.1| (U32825) H. influenzae predicted coding region HI1480 [Haemophilus influenzae Rd]

              10        20        30        40        50        60     
              |         |         |         |         |         |     
   1 MSETDLLLKMVRQPVKLYSVATLFHEFSEVITKLEHSVQKEPTSLLSEENWHKQFLKFAQALPAH
   2 MSETDLLLKMVRQPVKLYSVATLFHEFSEVITKLEHSVQKEPTSLLSEENWHKQFLKFAQALPAH


         70        80        90       100       110       120       130
         |         |         |         |         |         |         |
   1 GSASWLNLDDALQAVVGNSRSAFLHQLIAKLKSRHLQVLELNKIGSEPLDLSNLPAPFYVLLPES
   2 GSASWLNLDDALQAVVGNSRSAFLHQLIAKLKSRHLQVLELNKIGSEPLDLSNLPAPFYVLLPES


             140       150      
              |         |      
   1 FAARITLLVQDKALPYVRVSFEYWHA
   2 FAARITLLVQDKALPYVRVSFEYWHA