PFRMAT SS
TARGET T0161
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0161.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 1
METHOD
MODEL 1
M E 0.172
S B 0.249
E H 0.340
T H 0.484
D H 0.568
L H 0.606
L H 0.667
L H 0.596
K H 0.632
M H 0.451
V H 0.339
R H 0.252
Q B 0.299
P H 0.225
V E 0.299
K E 0.296
L A 0.240
Y H 0.342
S H 0.351
V H 0.586
A H 0.671
T H 0.718
L H 0.693
F H 0.584
H H 0.656
E H 0.596
F H 0.521
S H 0.675
E H 0.692
V H 0.699
I H 0.559
T H 0.586
K H 0.459
L H 0.409
E H 0.454
H H 0.313
S H 0.298
V H 0.230
Q E 0.206
K H 0.155
E B 0.336
P E 0.191
T H 0.218
S H 0.290
L H 0.270
L H 0.226
S B 0.261
E H 0.435
E H 0.469
N H 0.428
W H 0.566
H H 0.679
K H 0.772
Q H 0.789
F H 0.757
L H 0.737
K H 0.753
F H 0.695
A H 0.584
Q H 0.555
A H 0.364
L B 0.349
P H 0.221
A H 0.326
H S 0.153
G S 0.198
S E 0.170
A H 0.253
S H 0.431
W H 0.287
L H 0.260
N E 0.187
L H 0.417
D H 0.606
D H 0.672
A H 0.758
L H 0.676
Q H 0.688
A H 0.627
V H 0.536
V H 0.335
G H 0.196
N H 0.256
S H 0.380
R H 0.565
S H 0.677
A H 0.791
F H 0.836
L H 0.849
H H 0.867
Q H 0.891
L H 0.868
I H 0.797
A H 0.795
K H 0.741
L H 0.573
K H 0.532
S H 0.479
R H 0.386
H H 0.290
L H 0.281
Q H 0.383
V H 0.290
L H 0.258
E E 0.295
L H 0.267
N H 0.182
K H 0.207
I B 0.276
G S 0.194
S B 0.158
E B 0.311
P E 0.211
L E 0.237
D E 0.239
L I 0.263
S H 0.372
N S 0.542
L B 0.348
P B 0.187
A B 0.288
P E 0.262
F E 0.352
Y E 0.416
V E 0.456
L E 0.311
L B 0.395
P B 0.259
E H 0.485
S H 0.487
F H 0.494
A H 0.561
A H 0.596
R H 0.499
I H 0.389
T H 0.526
L H 0.390
L H 0.414
V H 0.334
Q H 0.288
D H 0.247
K H 0.270
A S 0.190
L B 0.344
P H 0.202
Y E 0.330
V E 0.405
R E 0.400
V E 0.395
S E 0.383
F E 0.323
E E 0.206
Y E 0.252
W E 0.196
H E 0.179
A H 0.179
END