# List of top-scoring protein chains for t2k-100-30-str hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1lpuA 332 3.00e+00 1ci9A 392 3.19e+00 e.3.1.1 64767 1zymA 258 3.59e+00 1zymA a.60.10.1 18110 c.8.1.2 30705 1qnoA 344 5.43e+00 1qnoA c.1.8.3 28838 1qnrA 344 5.50e+00 1qnoA c.1.8.3 28834 1d6aB 262 5.63e+00 1qi7A d.165.1.1 42198 1fcyA 236 6.15e+00 2lbd a.123.1.1 19282 1g99A 408 6.56e+00 1g99A c.55.1.2 33457 c.55.1.2 33458 4lbd 267 6.73e+00 2lbd a.123.1.1 19289 2lbd 267 6.75e+00 2lbd a.123.1.1 19287 1a26 361 7.50e+00 1a26 a.41.1.1 17412 d.166.1.2 42274 1sknP 92 8.03e+00 1sknP a.37.1.1 17127 1jl5A 454 8.32e+00 c.10.2.6 66830 1moq 368 8.89e+00 1moq c.80.1.1 35302 1ci8A 392 8.90e+00 e.3.1.1 64765 1apa 266 9.35e+00 1qi7A d.165.1.1 42205 1g9uA 454 9.86e+00 c.10.2.6 65172 1f0yA 302 1.04e+01 2hdhA a.100.1.3 18793 c.2.1.6 30197 1efyA 350 1.16e+01 1a26 a.41.1.1 17413 d.166.1.2 42275 1ah6 220 1.23e+01 1yer d.122.1.1 41094 1ax4A 467 1.23e+01 1ax4A c.67.1.2 34391 1dc1A 323 1.29e+01 1dc1A c.52.1.11 33321 1floA 422 1.30e+01 1floA a.60.9.1 18106 d.163.1.1 42166 1ihp 438 1.37e+01 1ihp c.60.1.3 33993 1qh4A 380 1.46e+01 1qh4A a.83.1.1 18462 d.128.1.2 41197 1rypA 243 1.49e+01 1pmaA d.153.1.4 41932 2hdhA 293 1.63e+01 2hdhA a.100.1.3 18795 c.2.1.6 30199 1elqA 390 1.64e+01 1elqA c.67.1.3 34436 2vsgA 358 1.64e+01 2vsgA h.4.1.1 45780 1eluA 390 1.65e+01 1elqA c.67.1.3 34434 1qciA 262 1.70e+01 1qi7A d.165.1.1 42201 1jmtA 104 1.70e+01 d.58.7.3 63180 1bza 262 1.79e+01 1btl e.3.1.1 42701 1uag 437 1.83e+01 4uagA c.5.1.1 30653 c.59.1.1 33954 c.72.2.1 34957 3uagA 437 1.84e+01 4uagA c.5.1.1 30652 c.59.1.1 33953 c.72.2.1 34956 4uagA 437 1.84e+01 4uagA c.5.1.1 30651 c.59.1.1 33952 c.72.2.1 34955 1kdxA 81 1.85e+01 1kdxA a.12.1.1 16375 1gesA 450 1.87e+01 3grs c.3.1.5 30473 c.3.1.5 30474 d.87.1.1 40168 1hekA 131 1.97e+01 a.61.1.5 65818 1khhA 198 2.03e+01 c.66.1.16 68615 1jagA 241 2.06e+01 c.37.1.1 66463 1ffyA 917 2.14e+01 1qu2A a.27.1.1 16926 b.51.1.1 26891 c.26.1.1 31593 1qu2A 917 2.14e+01 1qu2A a.27.1.1 16925 b.51.1.1 26890 c.26.1.1 31592 1hnnA 282 2.19e+01 c.66.1.15 65895 1dkzA 219 2.22e+01 1dkzA e.20.1.1 43314 1aep 161 2.30e+01 1aep a.63.1.1 18139 1eluB 390 2.35e+01 1elqA c.67.1.3 34435 1i5pA 633 2.41e+01 1i5pA b.18.1.3 61817 b.77.2.1 61818 f.1.3.1 61819 1qqvA 67 2.44e+01 1qqvA a.14.1.1 16379 1bob 320 2.58e+01 1bob d.108.1.1 40816 3ygsP 97 2.58e+01 3ygsP a.77.1.1 18435 3nodB 423 2.59e+01 1nseA d.174.1.1 42513 1jli 112 2.61e+01 1jli a.26.1.2 16884 1dmzA 158 2.62e+01 1qu5A b.26.1.2 23921 1hr6A 475 2.77e+01 1hr6A d.185.1.1 61164 d.185.1.1 61165 1eg7A 557 3.00e+01 1eg7A c.37.1.10 32241 1dqsA 393 3.04e+01 1dqsA e.22.1.1 43347 1ca1 370 3.07e+01 1ca1 a.124.1.1 19340 b.12.1.3 23648 1dkxA 219 3.12e+01 1dkzA e.20.1.1 43315 1g73A 162 3.24e+01 1fewA a.7.4.1 16332 1ab4 477 3.25e+01 1ab4 e.11.1.1 43251 1i37A 260 3.30e+01 1a28A a.123.1.1 61583 1qovH 260 3.30e+01 6prcH b.41.1.1 25464 f.2.1.2 43457 1vii 36 3.32e+01 1vii a.14.1.1 16378 1fewA 184 3.37e+01 1fewA a.7.4.1 16334 1iexA 605 3.42e+01 c.1.8.7 66127 c.23.11.1 66128 1ex1A 605 3.63e+01 1ex1A c.1.8.7 29013 c.23.11.1 31347 1fo0B 112 3.73e+01 1kb5B b.1.1.1 20631 1qtwA 285 3.85e+01 1qumA c.1.15.1 29392 1g6aA 271 3.88e+01 1btl e.3.1.1 42704