# List of top-scoring protein chains for t2k-100-30-dssp_ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1lpuA 332 7.48e-01 1f0yA 302 4.25e+00 2hdhA a.100.1.3 18793 c.2.1.6 30197 2hdhA 293 4.83e+00 2hdhA a.100.1.3 18795 c.2.1.6 30199 3nodB 423 4.96e+00 1nseA d.174.1.1 42513 1ffyA 917 7.31e+00 1qu2A a.27.1.1 16926 b.51.1.1 26891 c.26.1.1 31593 1qu2A 917 7.31e+00 1qu2A a.27.1.1 16925 b.51.1.1 26890 c.26.1.1 31592 1qh4A 380 7.68e+00 1qh4A a.83.1.1 18462 d.128.1.2 41197 1g99A 408 7.76e+00 1g99A c.55.1.2 33457 c.55.1.2 33458 1nar 290 8.36e+00 1nar c.1.8.5 28988 1khhA 198 9.69e+00 c.66.1.16 68615 1sknP 92 1.11e+01 1sknP a.37.1.1 17127 1rypA 243 1.20e+01 1pmaA d.153.1.4 41932 1jagA 241 1.22e+01 c.37.1.1 66463 1zymA 258 1.43e+01 1zymA a.60.10.1 18110 c.8.1.2 30705 1a16 440 1.60e+01 1az9 c.55.2.1 33548 d.127.1.1 41165 1az9 457 1.68e+01 1az9 c.55.2.1 33547 d.127.1.1 41164 1d6aB 262 1.78e+01 1qi7A d.165.1.1 42198 1jj2M 186 1.83e+01 1ffkK c.55.4.1 63098 1qnoA 344 1.86e+01 1qnoA c.1.8.3 28838 1ex1A 605 1.90e+01 1ex1A c.1.8.7 29013 c.23.11.1 31347 1qnrA 344 1.90e+01 1qnoA c.1.8.3 28834 1iexA 605 1.92e+01 c.1.8.7 66127 c.23.11.1 66128 1ffkK 186 1.95e+01 1ffkK c.55.4.1 33731 1ax4A 467 2.06e+01 1ax4A c.67.1.2 34391 1gh8A 89 2.07e+01 1gh8A d.58.12.1 39309 1g9uA 454 2.21e+01 c.10.2.6 65172 1a26 361 2.22e+01 1a26 a.41.1.1 17412 d.166.1.2 42274 1efyA 350 2.24e+01 1a26 a.41.1.1 17413 d.166.1.2 42275 1jl5A 454 2.30e+01 c.10.2.6 66830 1dkzA 219 2.30e+01 1dkzA e.20.1.1 43314 1hr6A 475 2.33e+01 1hr6A d.185.1.1 61164 d.185.1.1 61165 1aep 161 2.38e+01 1aep a.63.1.1 18139 1ci9A 392 2.41e+01 e.3.1.1 64767 1apa 266 2.41e+01 1qi7A d.165.1.1 42205 1ihp 438 2.46e+01 1ihp c.60.1.3 33993 6pfkA 319 2.69e+01 3pfk c.89.1.1 35583 1dsbA 189 2.70e+01 1fvkA a.44.1.1 17497 c.47.1.4 32791 1kdxA 81 2.72e+01 1kdxA a.12.1.1 16375 1jmtA 104 2.82e+01 d.58.7.3 63180 3ygsP 97 2.82e+01 3ygsP a.77.1.1 18435 3pfk 319 2.84e+01 3pfk c.89.1.1 35581 4pfk 319 2.86e+01 3pfk c.89.1.1 35582 1fewA 184 2.98e+01 1fewA a.7.4.1 16334 1qguB 519 3.04e+01 1qguB c.92.2.3 35626 1kskA 234 3.07e+01 1dat 174 3.12e+01 2fha a.25.1.1 16677 1idsA 207 3.22e+01 1avmA a.2.11.1 15722 d.44.1.1 38730 1dkxA 219 3.24e+01 1dkzA e.20.1.1 43315 3uagA 437 3.25e+01 4uagA c.5.1.1 30652 c.59.1.1 33953 c.72.2.1 34956 1jvr 137 3.33e+01 1jvr a.61.1.2 18132 1vii 36 3.34e+01 1vii a.14.1.1 16378 1pyp 285 3.37e+01 1wgjA b.40.5.1 25409 1g73A 162 3.40e+01 1fewA a.7.4.1 16332 4uagA 437 3.49e+01 4uagA c.5.1.1 30651 c.59.1.1 33952 c.72.2.1 34955 1uag 437 3.49e+01 4uagA c.5.1.1 30653 c.59.1.1 33954 c.72.2.1 34957 1hnnA 282 3.51e+01 c.66.1.15 65895 1qh8B 519 3.59e+01 1qguB c.92.2.3 35634 1l0wA 580 3.63e+01 1gesA 450 3.65e+01 3grs c.3.1.5 30473 c.3.1.5 30474 d.87.1.1 40168 1blxA 326 3.68e+01 1hcl d.144.1.1 41596 1hu4A 288 3.77e+01 1hu4A c.2.1.2 61268 2lbd 267 3.79e+01 2lbd a.123.1.1 19287 1qciA 262 3.79e+01 1qi7A d.165.1.1 42201 1moq 368 3.79e+01 1moq c.80.1.1 35302 1qqvA 67 3.84e+01 1qqvA a.14.1.1 16379 1aew 174 3.89e+01 2fha a.25.1.1 16676 1fcyA 236 3.93e+01 2lbd a.123.1.1 19282