PFRMAT SS
TARGET T0159
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0159.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 24
METHOD
MODEL 1
K C 0.783
K C 0.628
F E 0.428
Y E 0.486
R E 0.493
E C 0.401
G C 0.405
V T 0.319
F T 0.309
V T 0.415
N T 0.550
G T 0.597
A T 0.477
A E 0.350
Q E 0.332
G E 0.375
Y E 0.596
L E 0.546
I C 0.444
D C 0.615
K H 0.437
K H 0.629
T H 0.520
A H 0.555
D H 0.535
Q T 0.745
Y T 0.719
K T 0.723
I T 0.682
T C 0.368
N C 0.437
I G 0.731
A G 0.705
Q G 0.698
L H 0.468
K H 0.516
D C 0.580
P H 0.312
K T 0.353
I H 0.387
A G 0.391
K H 0.405
L H 0.428
F C 0.467
D T 0.559
T T 0.741
N T 0.827
G T 0.869
D T 0.553
G C 0.451
K T 0.406
A T 0.335
D E 0.471
L E 0.600
T E 0.537
G E 0.397
C C 0.503
N T 0.640
P T 0.717
G T 0.690
W T 0.521
G H 0.482
C H 0.884
E H 0.881
G H 0.885
A H 0.936
I H 0.958
N H 0.968
H H 0.972
Q H 0.967
L H 0.957
A H 0.939
A H 0.901
Y H 0.748
E T 0.446
L T 0.641
T T 0.777
N T 0.714
T C 0.439
V E 0.671
T E 0.861
H E 0.865
N E 0.657
Q T 0.329
G C 0.466
N T 0.437
Y H 0.498
A H 0.752
A H 0.865
M H 0.954
M H 0.955
A H 0.978
D H 0.971
T H 0.972
I H 0.976
S H 0.978
R H 0.981
Y H 0.967
K H 0.901
E H 0.730
G C 0.763
K C 0.688
P C 0.643
V E 0.893
F E 0.969
Y E 0.964
Y E 0.870
T E 0.626
W C 0.452
T C 0.451
P C 0.515
Y C 0.460
W E 0.348
V E 0.370
S E 0.249
N T 0.287
E T 0.358
L T 0.340
K T 0.797
P T 0.911
G T 0.887
K T 0.572
D E 0.486
V E 0.559
V E 0.576
W E 0.540
L C 0.362
Q C 0.379
V C 0.510
P T 0.423
F T 0.468
S T 0.517
A T 0.505
L T 0.451
P T 0.528
G T 0.517
D T 0.516
K T 0.484
N T 0.435
A T 0.396
D T 0.376
T E 0.371
K E 0.411
L E 0.311
P T 0.594
N T 0.683
G T 0.653
A T 0.412
N C 0.495
Y C 0.736
G C 0.950
END