PFRMAT SS
TARGET T0159
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0159.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 24
METHOD
MODEL 1
K B 0.193
K E 0.182
F E 0.318
Y E 0.260
R E 0.310
E H 0.213
G C 0.175
V H 0.276
F E 0.195
V B 0.169
N H 0.222
G S 0.316
A B 0.222
A H 0.204
Q H 0.201
G S 0.153
Y E 0.346
L E 0.336
I B 0.431
D B 0.326
K H 0.522
K H 0.431
T H 0.356
A H 0.473
D I 0.269
Q S 0.244
Y I 0.288
K S 0.397
I E 0.328
T G 0.374
N B 0.626
I I 0.661
A H 0.615
Q S 0.541
L E 0.280
K S 0.298
D E 0.282
P I 0.227
K H 0.436
I H 0.224
A B 0.221
K E 0.271
L E 0.251
F B 0.298
D C 0.283
T H 0.477
N H 0.168
G S 0.330
D H 0.134
G E 0.205
K S 0.161
A E 0.192
D E 0.396
L A 0.342
T G 0.289
G S 0.287
C B 0.247
N C 0.313
P G 0.201
G S 0.318
W E 0.167
G H 0.235
C H 0.482
E H 0.623
G H 0.670
A H 0.804
I H 0.836
N H 0.854
H H 0.881
Q H 0.902
L H 0.827
A H 0.727
A H 0.608
Y B 0.515
E S 0.285
L B 0.161
T H 0.166
N I 0.261
T E 0.399
V E 0.587
T E 0.677
H A 0.396
N E 0.375
Q S 0.168
G C 0.228
N H 0.195
Y H 0.386
A H 0.635
A H 0.736
M H 0.862
M H 0.868
A H 0.927
D H 0.959
T H 0.942
I H 0.911
S H 0.886
R H 0.852
Y H 0.696
K H 0.577
E B 0.569
G S 0.641
K B 0.578
P E 0.661
V E 0.725
F E 0.615
Y E 0.550
Y E 0.322
T E 0.342
W E 0.148
T C 0.365
P H 0.323
Y H 0.392
W H 0.431
V H 0.381
S H 0.317
N H 0.177
E S 0.181
L E 0.264
K C 0.260
P G 0.270
G S 0.476
K B 0.225
D E 0.317
V E 0.216
V E 0.263
W E 0.276
L B 0.345
Q H 0.151
V E 0.280
P B 0.274
F I 0.409
S I 0.295
A S 0.254
L E 0.216
P D 0.277
G H 0.185
D S 0.299
K H 0.218
N E 0.214
A H 0.254
D H 0.361
T H 0.288
K E 0.254
L C 0.226
P H 0.284
N B 0.179
G S 0.205
A H 0.200
N A 0.183
Y B 0.168
G D 0.301
END