PFRMAT SS TARGET T0159 METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net METHOD This is a 4-layer network, with METHOD window units METHOD 5 15 METHOD 7 15 METHOD 9 15 METHOD 13 6 (1 EBGHTL ) METHOD The input amino acid frequencies were determined from METHOD alignment T0159.t2k-thin90.a2m.gz METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1) METHOD Counts were regularized to probabilities using METHOD /projects/compbio/lib/recode3.20comp METHOD Total sequence weight for alignment was 45 METHOD MODEL 1 A C 0.578 D C 0.469 L C 0.366 P T 0.418 G T 0.622 K T 0.654 G T 0.689 I C 0.435 T E 0.430 V E 0.680 N E 0.859 P E 0.896 V E 0.798 Q E 0.610 S C 0.559 T C 0.510 I H 0.490 T H 0.654 E H 0.956 E H 0.991 T H 0.992 F H 0.991 Q H 0.988 T H 0.993 L H 0.996 L H 0.998 V H 0.998 S H 0.997 R H 0.994 A H 0.992 L H 0.984 E H 0.967 K H 0.940 L H 0.821 G C 0.903 Y C 0.829 T C 0.635 V E 0.420 N E 0.414 K E 0.425 P E 0.418 S E 0.540 E E 0.539 V T 0.381 D T 0.431 Y H 0.350 N H 0.662 V H 0.918 G H 0.963 Y H 0.962 T H 0.966 S H 0.973 L H 0.978 A H 0.988 S H 0.933 G C 0.713 D C 0.649 A C 0.372 T C 0.317 F E 0.657 T E 0.676 A E 0.340 V G 0.335 N G 0.316 W H 0.412 T T 0.400 P T 0.381 L T 0.372 H T 0.336 D H 0.550 N H 0.862 M H 0.904 Y H 0.925 E H 0.934 A H 0.956 A H 0.947 G H 0.894 G H 0.880 D H 0.741 K C 0.769 K C 0.642 F E 0.838 Y E 0.821 R E 0.811 E E 0.558 G E 0.371 V T 0.369 F T 0.371 V T 0.555 N T 0.677 G T 0.614 A E 0.425 A E 0.753 Q E 0.841 G E 0.851 Y E 0.865 L E 0.769 I E 0.503 D C 0.583 K H 0.531 K H 0.629 T H 0.539 A H 0.614 D H 0.601 Q T 0.740 Y T 0.707 K T 0.731 I T 0.650 T C 0.370 N C 0.427 I G 0.546 A G 0.455 Q H 0.437 L H 0.574 K H 0.600 D H 0.453 P C 0.362 K T 0.363 I H 0.361 A H 0.333 K H 0.325 L C 0.415 F C 0.553 D T 0.507 T T 0.693 N T 0.690 G T 0.739 D T 0.586 G C 0.438 K T 0.417 A T 0.387 D E 0.315 L E 0.473 T E 0.456 G C 0.356 C C 0.564 N T 0.573 P T 0.665 G T 0.699 W T 0.604 G H 0.426 C H 0.830 E H 0.876 G H 0.922 A H 0.962 I H 0.978 N H 0.982 H H 0.983 Q H 0.976 L H 0.963 A H 0.943 A H 0.910 Y H 0.769 E T 0.442 L T 0.652 T T 0.801 N T 0.780 T C 0.427 V E 0.590 T E 0.863 H E 0.890 N E 0.735 Q E 0.393 G C 0.484 N T 0.449 Y H 0.682 A H 0.878 A H 0.940 M H 0.978 M H 0.981 A H 0.989 D H 0.985 T H 0.983 I H 0.986 S H 0.985 R H 0.985 Y H 0.962 K H 0.905 E H 0.713 G C 0.804 K C 0.751 P C 0.666 V E 0.946 F E 0.987 Y E 0.987 Y E 0.943 T E 0.759 W C 0.448 T C 0.513 P C 0.575 Y C 0.588 W T 0.366 V T 0.365 S T 0.314 N T 0.341 E T 0.385 L C 0.327 K T 0.821 P T 0.909 G T 0.895 K T 0.614 D C 0.409 V E 0.427 V E 0.422 W E 0.363 L C 0.384 Q C 0.466 V C 0.518 P T 0.514 F T 0.474 S T 0.571 A T 0.507 L C 0.457 P T 0.434 G T 0.398 D T 0.405 K T 0.355 N T 0.397 A T 0.389 D T 0.443 T T 0.497 K T 0.481 L T 0.526 P T 0.489 N T 0.553 G T 0.510 A T 0.408 N T 0.398 Y T 0.422 G T 0.421 F C 0.529 P C 0.542 V H 0.339 S H 0.578 T H 0.715 M H 0.841 H H 0.853 I H 0.809 V H 0.842 A H 0.774 N H 0.705 K H 0.764 A H 0.776 W H 0.774 A H 0.699 E H 0.721 K H 0.828 N C 0.713 P H 0.850 A H 0.964 A H 0.991 A H 0.992 K H 0.992 L H 0.992 F H 0.991 A H 0.974 I H 0.870 M H 0.419 Q C 0.878 L C 0.852 P C 0.905 V H 0.749 A H 0.843 D H 0.885 I H 0.977 N H 0.984 A H 0.988 Q H 0.986 N H 0.992 A H 0.990 I H 0.984 M H 0.983 H H 0.960 A H 0.863 G H 0.562 A H 0.408 A T 0.476 S T 0.545 E T 0.507 G C 0.421 D C 0.706 I H 0.962 Q H 0.983 G H 0.994 H H 0.995 V H 0.998 D H 0.999 G H 0.999 W H 0.998 I H 0.993 K H 0.989 A H 0.968 H H 0.491 Q H 0.946 Q H 0.941 Q H 0.923 F H 0.934 D H 0.924 G H 0.899 W H 0.869 V H 0.727 N H 0.673 E H 0.874 A H 0.862 L H 0.852 A H 0.827 A H 0.738 Q C 0.548 K C 0.967 END