PFRMAT SS
TARGET T0159
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-alpha-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	   11 (1 ABCDEFGHIST )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0159.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 45
METHOD
MODEL 1
A E 0.181
D B 0.290
L B 0.425
P H 0.355
G H 0.394
K B 0.359
G S 0.469
I B 0.392
T E 0.489
V E 0.580
N E 0.645
P E 0.396
V E 0.347
Q E 0.315
S B 0.225
T B 0.337
I I 0.342
T H 0.505
E H 0.666
E H 0.787
T H 0.850
F H 0.916
Q H 0.914
T H 0.926
L H 0.957
L H 0.959
V H 0.947
S H 0.962
R H 0.972
A H 0.964
L H 0.949
E H 0.866
K H 0.839
L B 0.606
G S 0.500
Y B 0.391
T E 0.367
V A 0.434
N G 0.212
K E 0.438
P E 0.429
S E 0.336
E E 0.258
V H 0.214
D S 0.241
Y C 0.217
N H 0.421
V H 0.647
G H 0.793
Y H 0.765
T H 0.839
S H 0.894
L H 0.729
A H 0.719
S B 0.759
G S 0.515
D B 0.233
A E 0.485
T E 0.248
F E 0.412
T E 0.408
A E 0.271
V H 0.173
N E 0.208
W S 0.171
T B 0.252
P H 0.275
L S 0.189
H B 0.244
D H 0.296
N H 0.556
M H 0.720
Y H 0.733
E H 0.762
A H 0.765
A H 0.674
G H 0.381
G H 0.394
D B 0.337
K S 0.467
K B 0.476
F A 0.422
Y E 0.171
R E 0.379
E E 0.165
G B 0.212
V H 0.229
F E 0.185
V E 0.172
N G 0.198
G S 0.329
A B 0.212
A E 0.237
Q E 0.237
G E 0.245
Y E 0.400
L E 0.348
I B 0.445
D B 0.396
K H 0.589
K H 0.388
T I 0.375
A H 0.476
D I 0.324
Q S 0.247
Y I 0.345
K S 0.528
I E 0.386
T G 0.349
N B 0.549
I I 0.602
A H 0.637
Q S 0.496
L H 0.376
K H 0.287
D S 0.427
P B 0.179
K H 0.336
I E 0.202
A E 0.226
K E 0.247
L E 0.301
F B 0.389
D E 0.286
T H 0.391
N S 0.217
G S 0.230
D H 0.223
G E 0.159
K D 0.228
A E 0.167
D E 0.356
L A 0.343
T G 0.355
G S 0.336
C B 0.235
N C 0.382
P G 0.244
G S 0.326
W B 0.164
G H 0.241
C H 0.490
E H 0.670
G H 0.787
A H 0.877
I H 0.908
N H 0.922
H H 0.927
Q H 0.914
L H 0.818
A H 0.714
A H 0.521
Y B 0.321
E S 0.224
L I 0.157
T H 0.171
N S 0.209
T E 0.309
V E 0.611
T E 0.694
H E 0.435
N E 0.356
Q S 0.159
G C 0.261
N H 0.271
Y H 0.553
A H 0.763
A H 0.853
M H 0.922
M H 0.930
A H 0.958
D H 0.972
T H 0.954
I H 0.929
S H 0.909
R H 0.869
Y H 0.709
K H 0.568
E B 0.597
G S 0.643
K B 0.551
P E 0.644
V E 0.724
F E 0.606
Y E 0.560
Y E 0.298
T E 0.317
W S 0.163
T C 0.358
P H 0.160
Y B 0.283
W H 0.312
V H 0.294
S H 0.232
N S 0.167
E S 0.179
L B 0.282
K C 0.267
P G 0.249
G S 0.499
K B 0.228
D E 0.289
V E 0.218
V B 0.257
W E 0.294
L B 0.300
Q H 0.171
V B 0.261
P B 0.311
F H 0.236
S S 0.276
A B 0.168
L B 0.211
P C 0.216
G H 0.219
D S 0.207
K S 0.163
N E 0.245
A H 0.186
D E 0.182
T H 0.242
K S 0.306
L B 0.207
P H 0.220
N B 0.222
G S 0.327
A H 0.232
N H 0.160
Y H 0.158
G S 0.307
F B 0.271
P B 0.236
V I 0.219
S H 0.497
T H 0.350
M H 0.351
H H 0.492
I H 0.432
V H 0.408
A H 0.533
N H 0.409
K H 0.613
A H 0.734
W H 0.709
A H 0.697
E H 0.757
K S 0.439
N A 0.301
P H 0.669
A H 0.881
A H 0.840
A H 0.920
K H 0.950
L H 0.910
F H 0.786
A H 0.789
I H 0.463
M E 0.414
Q S 0.272
L B 0.464
P B 0.635
V H 0.489
A H 0.828
D H 0.776
I H 0.883
N H 0.921
A H 0.948
Q H 0.930
N H 0.916
A H 0.939
I H 0.922
M H 0.802
H H 0.700
A H 0.273
G B 0.230
A S 0.242
A B 0.238
S B 0.287
E H 0.244
G H 0.171
D B 0.505
I H 0.765
Q H 0.932
G H 0.965
H H 0.966
V H 0.960
D H 0.962
G H 0.978
W H 0.941
I H 0.869
K H 0.883
A H 0.330
H A 0.479
Q H 0.502
Q H 0.700
Q H 0.551
F H 0.563
D H 0.607
G H 0.706
W S 0.429
V B 0.348
N B 0.550
E H 0.847
A H 0.883
L H 0.830
A H 0.764
A H 0.589
Q H 0.276
K H 0.221
END